Protein–RNA interactions for Protein: Q9NXR1

NDE1, Nuclear distribution protein nudE homolog 1, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1Q9NXR1 VPS53-216ENST00000574029 585 ntTSL 4 BASIC17.51■□□□□ 0.39
NDE1Q9NXR1 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC17.51■□□□□ 0.39
NDE1Q9NXR1 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC17.51■□□□□ 0.39
NDE1Q9NXR1 AL138688.1-201ENST00000624851 1594 ntBASIC17.51■□□□□ 0.39
NDE1Q9NXR1 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC17.51■□□□□ 0.39
NDE1Q9NXR1 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC17.51■□□□□ 0.39
NDE1Q9NXR1 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NDE1Q9NXR1 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NDE1Q9NXR1 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
NDE1Q9NXR1 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NDE1Q9NXR1 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
NDE1Q9NXR1 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NDE1Q9NXR1 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NDE1Q9NXR1 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NDE1Q9NXR1 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
NDE1Q9NXR1 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NDE1Q9NXR1 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC17.5■□□□□ 0.39
NDE1Q9NXR1 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
NDE1Q9NXR1 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
NDE1Q9NXR1 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC17.5■□□□□ 0.39
NDE1Q9NXR1 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
NDE1Q9NXR1 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC17.5■□□□□ 0.39
NDE1Q9NXR1 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC17.5■□□□□ 0.39
NDE1Q9NXR1 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
NDE1Q9NXR1 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC17.5■□□□□ 0.39
NDE1Q9NXR1 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
NDE1Q9NXR1 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
NDE1Q9NXR1 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
NDE1Q9NXR1 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
NDE1Q9NXR1 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
NDE1Q9NXR1 METTL15-202ENST00000403099 795 ntTSL 5 BASIC17.5■□□□□ 0.39
NDE1Q9NXR1 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC17.5■□□□□ 0.39
NDE1Q9NXR1 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
NDE1Q9NXR1 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
NDE1Q9NXR1 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC17.5■□□□□ 0.39
NDE1Q9NXR1 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC17.5■□□□□ 0.39
NDE1Q9NXR1 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
NDE1Q9NXR1 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
NDE1Q9NXR1 Six3os1_6.1-201ENST00000620790 196 ntBASIC17.5■□□□□ 0.39
NDE1Q9NXR1 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC17.5■□□□□ 0.39
NDE1Q9NXR1 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.5■□□□□ 0.39
NDE1Q9NXR1 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
NDE1Q9NXR1 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
NDE1Q9NXR1 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
NDE1Q9NXR1 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC17.5■□□□□ 0.39
NDE1Q9NXR1 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
NDE1Q9NXR1 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
NDE1Q9NXR1 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC17.5■□□□□ 0.39
NDE1Q9NXR1 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
NDE1Q9NXR1 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
NDE1Q9NXR1 PCDHB19P-201ENST00000570871 2371 ntBASIC17.5■□□□□ 0.39
NDE1Q9NXR1 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
NDE1Q9NXR1 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC17.5■□□□□ 0.39
NDE1Q9NXR1 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
NDE1Q9NXR1 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
NDE1Q9NXR1 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC17.49■□□□□ 0.39
NDE1Q9NXR1 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
NDE1Q9NXR1 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
NDE1Q9NXR1 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
NDE1Q9NXR1 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
NDE1Q9NXR1 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC17.49■□□□□ 0.39
NDE1Q9NXR1 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
NDE1Q9NXR1 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
NDE1Q9NXR1 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
NDE1Q9NXR1 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC17.49■□□□□ 0.39
NDE1Q9NXR1 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
NDE1Q9NXR1 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
NDE1Q9NXR1 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC17.49■□□□□ 0.39
NDE1Q9NXR1 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC17.49■□□□□ 0.39
NDE1Q9NXR1 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
NDE1Q9NXR1 DERL1-203ENST00000419562 918 ntTSL 2 BASIC17.49■□□□□ 0.39
NDE1Q9NXR1 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
NDE1Q9NXR1 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
NDE1Q9NXR1 MIR4758-201ENST00000577688 71 ntBASIC17.49■□□□□ 0.39
NDE1Q9NXR1 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC17.49■□□□□ 0.39
NDE1Q9NXR1 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC17.49■□□□□ 0.39
NDE1Q9NXR1 MYC-209ENST00000641252 345 ntBASIC17.49■□□□□ 0.39
NDE1Q9NXR1 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
NDE1Q9NXR1 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
NDE1Q9NXR1 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
NDE1Q9NXR1 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
NDE1Q9NXR1 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
NDE1Q9NXR1 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
NDE1Q9NXR1 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
NDE1Q9NXR1 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC17.49■□□□□ 0.39
NDE1Q9NXR1 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
NDE1Q9NXR1 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
NDE1Q9NXR1 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC17.49■□□□□ 0.39
NDE1Q9NXR1 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
NDE1Q9NXR1 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC17.49■□□□□ 0.39
NDE1Q9NXR1 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
NDE1Q9NXR1 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
NDE1Q9NXR1 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NDE1Q9NXR1 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC17.48■□□□□ 0.39
NDE1Q9NXR1 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
NDE1Q9NXR1 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC17.48■□□□□ 0.39
NDE1Q9NXR1 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC17.48■□□□□ 0.39
NDE1Q9NXR1 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NDE1Q9NXR1 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NDE1Q9NXR1 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms