Protein–RNA interactions for Protein: Q9H4D5

NXF3, Nuclear RNA export factor 3, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NXF3Q9H4D5 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
NXF3Q9H4D5 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC19.45■□□□□ 0.7
NXF3Q9H4D5 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC19.45■□□□□ 0.7
NXF3Q9H4D5 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
NXF3Q9H4D5 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NXF3Q9H4D5 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
NXF3Q9H4D5 KRT8P47-201ENST00000604727 1398 ntBASIC19.44■□□□□ 0.7
NXF3Q9H4D5 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC19.44■□□□□ 0.7
NXF3Q9H4D5 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NXF3Q9H4D5 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
NXF3Q9H4D5 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
NXF3Q9H4D5 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC19.44■□□□□ 0.7
NXF3Q9H4D5 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
NXF3Q9H4D5 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
NXF3Q9H4D5 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
NXF3Q9H4D5 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NXF3Q9H4D5 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
NXF3Q9H4D5 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NXF3Q9H4D5 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
NXF3Q9H4D5 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC19.44■□□□□ 0.7
NXF3Q9H4D5 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC19.44■□□□□ 0.7
NXF3Q9H4D5 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC19.44■□□□□ 0.7
NXF3Q9H4D5 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC19.44■□□□□ 0.7
NXF3Q9H4D5 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC19.44■□□□□ 0.7
NXF3Q9H4D5 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC19.44■□□□□ 0.7
NXF3Q9H4D5 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NXF3Q9H4D5 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
NXF3Q9H4D5 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC19.44■□□□□ 0.7
NXF3Q9H4D5 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NXF3Q9H4D5 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
NXF3Q9H4D5 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NXF3Q9H4D5 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
NXF3Q9H4D5 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC19.44■□□□□ 0.7
NXF3Q9H4D5 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
NXF3Q9H4D5 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NXF3Q9H4D5 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC19.44■□□□□ 0.7
NXF3Q9H4D5 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NXF3Q9H4D5 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
NXF3Q9H4D5 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
NXF3Q9H4D5 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NXF3Q9H4D5 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
NXF3Q9H4D5 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
NXF3Q9H4D5 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NXF3Q9H4D5 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
NXF3Q9H4D5 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
NXF3Q9H4D5 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NXF3Q9H4D5 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.43■□□□□ 0.7
NXF3Q9H4D5 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NXF3Q9H4D5 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
NXF3Q9H4D5 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
NXF3Q9H4D5 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NXF3Q9H4D5 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NXF3Q9H4D5 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
NXF3Q9H4D5 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NXF3Q9H4D5 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
NXF3Q9H4D5 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
NXF3Q9H4D5 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC19.43■□□□□ 0.7
NXF3Q9H4D5 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
NXF3Q9H4D5 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NXF3Q9H4D5 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
NXF3Q9H4D5 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
NXF3Q9H4D5 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
NXF3Q9H4D5 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
NXF3Q9H4D5 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC19.43■□□□□ 0.7
NXF3Q9H4D5 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC19.43■□□□□ 0.7
NXF3Q9H4D5 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC19.43■□□□□ 0.7
NXF3Q9H4D5 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
NXF3Q9H4D5 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC19.43■□□□□ 0.7
NXF3Q9H4D5 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
NXF3Q9H4D5 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
NXF3Q9H4D5 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC19.42■□□□□ 0.7
NXF3Q9H4D5 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
NXF3Q9H4D5 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.42■□□□□ 0.7
NXF3Q9H4D5 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
NXF3Q9H4D5 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
NXF3Q9H4D5 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
NXF3Q9H4D5 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC19.42■□□□□ 0.7
NXF3Q9H4D5 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC19.42■□□□□ 0.7
NXF3Q9H4D5 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
NXF3Q9H4D5 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
NXF3Q9H4D5 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
NXF3Q9H4D5 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC19.42■□□□□ 0.7
NXF3Q9H4D5 FUOM-202ENST00000368551 628 ntTSL 3 BASIC19.42■□□□□ 0.7
NXF3Q9H4D5 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC19.42■□□□□ 0.7
NXF3Q9H4D5 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC19.42■□□□□ 0.7
NXF3Q9H4D5 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
NXF3Q9H4D5 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC19.42■□□□□ 0.7
NXF3Q9H4D5 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
NXF3Q9H4D5 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC19.42■□□□□ 0.7
NXF3Q9H4D5 COX5A-204ENST00000567270 579 ntTSL 3 BASIC19.42■□□□□ 0.7
NXF3Q9H4D5 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
NXF3Q9H4D5 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC19.42■□□□□ 0.7
NXF3Q9H4D5 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC19.42■□□□□ 0.7
NXF3Q9H4D5 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC19.42■□□□□ 0.7
NXF3Q9H4D5 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
NXF3Q9H4D5 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
NXF3Q9H4D5 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
NXF3Q9H4D5 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
NXF3Q9H4D5 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
NXF3Q9H4D5 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms