Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC140Q96MF4 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC140Q96MF4 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC13.99□□□□□ -0.17
CCDC140Q96MF4 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC13.99□□□□□ -0.17
CCDC140Q96MF4 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC140Q96MF4 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC140Q96MF4 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC140Q96MF4 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
CCDC140Q96MF4 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC13.99□□□□□ -0.17
CCDC140Q96MF4 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC140Q96MF4 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
CCDC140Q96MF4 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC140Q96MF4 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC140Q96MF4 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC140Q96MF4 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC140Q96MF4 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
CCDC140Q96MF4 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC140Q96MF4 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC140Q96MF4 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC140Q96MF4 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC13.98□□□□□ -0.17
CCDC140Q96MF4 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC140Q96MF4 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
CCDC140Q96MF4 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC140Q96MF4 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC140Q96MF4 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC140Q96MF4 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC140Q96MF4 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC140Q96MF4 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC140Q96MF4 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC13.98□□□□□ -0.17
CCDC140Q96MF4 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC140Q96MF4 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC140Q96MF4 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC140Q96MF4 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC13.98□□□□□ -0.17
CCDC140Q96MF4 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC140Q96MF4 CLN6-204ENST00000564752 900 ntTSL 3 BASIC13.98□□□□□ -0.17
CCDC140Q96MF4 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC140Q96MF4 CLN6-214ENST00000636314 442 ntTSL 3 BASIC13.98□□□□□ -0.17
CCDC140Q96MF4 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
CCDC140Q96MF4 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
CCDC140Q96MF4 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC13.98□□□□□ -0.17
CCDC140Q96MF4 KRT18P55-202ENST00000578578 1546 ntBASIC13.98□□□□□ -0.17
CCDC140Q96MF4 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC13.98□□□□□ -0.17
CCDC140Q96MF4 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC140Q96MF4 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC13.98□□□□□ -0.17
CCDC140Q96MF4 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC140Q96MF4 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC140Q96MF4 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC13.98□□□□□ -0.17
CCDC140Q96MF4 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC13.98□□□□□ -0.17
CCDC140Q96MF4 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC13.98□□□□□ -0.17
CCDC140Q96MF4 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC140Q96MF4 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC13.98□□□□□ -0.17
CCDC140Q96MF4 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC140Q96MF4 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC140Q96MF4 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
CCDC140Q96MF4 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC140Q96MF4 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC140Q96MF4 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC140Q96MF4 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC140Q96MF4 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC13.97□□□□□ -0.17
CCDC140Q96MF4 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC140Q96MF4 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
CCDC140Q96MF4 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC140Q96MF4 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC140Q96MF4 AC067852.2-201ENST00000590513 2313 ntBASIC13.97□□□□□ -0.17
CCDC140Q96MF4 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC140Q96MF4 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
CCDC140Q96MF4 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC140Q96MF4 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC13.97□□□□□ -0.17
CCDC140Q96MF4 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC140Q96MF4 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC140Q96MF4 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC13.97□□□□□ -0.17
CCDC140Q96MF4 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC140Q96MF4 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
CCDC140Q96MF4 AC100803.2-201ENST00000562459 1963 ntBASIC13.97□□□□□ -0.17
CCDC140Q96MF4 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC140Q96MF4 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC140Q96MF4 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC140Q96MF4 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC140Q96MF4 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC140Q96MF4 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC13.97□□□□□ -0.17
CCDC140Q96MF4 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC13.97□□□□□ -0.17
CCDC140Q96MF4 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC13.97□□□□□ -0.17
CCDC140Q96MF4 NME3-204ENST00000563498 920 ntTSL 2 BASIC13.97□□□□□ -0.17
CCDC140Q96MF4 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
CCDC140Q96MF4 GPR32P1-201ENST00000601788 811 ntBASIC13.97□□□□□ -0.17
CCDC140Q96MF4 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
CCDC140Q96MF4 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC13.97□□□□□ -0.17
CCDC140Q96MF4 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
CCDC140Q96MF4 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC13.97□□□□□ -0.17
CCDC140Q96MF4 MED25-212ENST00000618715 1467 ntTSL 5 BASIC13.97□□□□□ -0.17
CCDC140Q96MF4 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
CCDC140Q96MF4 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC140Q96MF4 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC13.97□□□□□ -0.17
CCDC140Q96MF4 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
CCDC140Q96MF4 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC13.97□□□□□ -0.17
CCDC140Q96MF4 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC13.97□□□□□ -0.17
CCDC140Q96MF4 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC13.97□□□□□ -0.17
CCDC140Q96MF4 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
CCDC140Q96MF4 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC140Q96MF4 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms