Protein–RNA interactions for Protein: Q96B54

ZNF428, Zinc finger protein 428, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF428Q96B54 STK4-201ENST00000372801 2038 ntTSL 2 BASIC23.2■■□□□ 1.3
ZNF428Q96B54 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC23.2■■□□□ 1.3
ZNF428Q96B54 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
ZNF428Q96B54 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
ZNF428Q96B54 HLA-DQB1-201ENST00000374943 1656 ntBASIC23.19■■□□□ 1.3
ZNF428Q96B54 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC23.19■■□□□ 1.3
ZNF428Q96B54 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC23.19■■□□□ 1.3
ZNF428Q96B54 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
ZNF428Q96B54 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
ZNF428Q96B54 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
ZNF428Q96B54 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
ZNF428Q96B54 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
ZNF428Q96B54 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC23.19■■□□□ 1.3
ZNF428Q96B54 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
ZNF428Q96B54 EMBP1-201ENST00000458200 901 ntBASIC23.19■■□□□ 1.3
ZNF428Q96B54 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC23.19■■□□□ 1.3
ZNF428Q96B54 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC23.19■■□□□ 1.3
ZNF428Q96B54 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
ZNF428Q96B54 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC23.19■■□□□ 1.3
ZNF428Q96B54 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
ZNF428Q96B54 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC23.19■■□□□ 1.3
ZNF428Q96B54 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
ZNF428Q96B54 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
ZNF428Q96B54 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC23.19■■□□□ 1.3
ZNF428Q96B54 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
ZNF428Q96B54 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
ZNF428Q96B54 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
ZNF428Q96B54 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
ZNF428Q96B54 AP000997.3-201ENST00000623333 2250 ntBASIC23.19■■□□□ 1.3
ZNF428Q96B54 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC23.18■■□□□ 1.3
ZNF428Q96B54 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
ZNF428Q96B54 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
ZNF428Q96B54 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
ZNF428Q96B54 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
ZNF428Q96B54 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
ZNF428Q96B54 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
ZNF428Q96B54 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
ZNF428Q96B54 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
ZNF428Q96B54 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
ZNF428Q96B54 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
ZNF428Q96B54 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
ZNF428Q96B54 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC23.18■■□□□ 1.3
ZNF428Q96B54 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
ZNF428Q96B54 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
ZNF428Q96B54 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC23.18■■□□□ 1.3
ZNF428Q96B54 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC23.18■■□□□ 1.3
ZNF428Q96B54 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC23.18■■□□□ 1.3
ZNF428Q96B54 AC124864.1-201ENST00000623408 392 ntBASIC23.18■■□□□ 1.3
ZNF428Q96B54 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC23.18■■□□□ 1.3
ZNF428Q96B54 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC23.18■■□□□ 1.3
ZNF428Q96B54 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC23.18■■□□□ 1.3
ZNF428Q96B54 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC23.18■■□□□ 1.3
ZNF428Q96B54 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC23.18■■□□□ 1.3
ZNF428Q96B54 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
ZNF428Q96B54 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
ZNF428Q96B54 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
ZNF428Q96B54 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
ZNF428Q96B54 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
ZNF428Q96B54 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
ZNF428Q96B54 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
ZNF428Q96B54 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
ZNF428Q96B54 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
ZNF428Q96B54 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
ZNF428Q96B54 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
ZNF428Q96B54 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
ZNF428Q96B54 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
ZNF428Q96B54 TSPY12P-201ENST00000421279 868 ntBASIC23.17■■□□□ 1.3
ZNF428Q96B54 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
ZNF428Q96B54 AC074051.2-201ENST00000565115 352 ntBASIC23.17■■□□□ 1.3
ZNF428Q96B54 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC23.17■■□□□ 1.3
ZNF428Q96B54 AP005901.3-202ENST00000581653 237 ntBASIC23.17■■□□□ 1.3
ZNF428Q96B54 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
ZNF428Q96B54 IFNL4P1-201ENST00000607083 540 ntBASIC23.17■■□□□ 1.3
ZNF428Q96B54 AL691432.3-201ENST00000621860 400 ntBASIC23.17■■□□□ 1.3
ZNF428Q96B54 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
ZNF428Q96B54 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
ZNF428Q96B54 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC23.17■■□□□ 1.3
ZNF428Q96B54 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
ZNF428Q96B54 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC23.17■■□□□ 1.3
ZNF428Q96B54 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
ZNF428Q96B54 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC23.17■■□□□ 1.3
ZNF428Q96B54 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
ZNF428Q96B54 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
ZNF428Q96B54 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
ZNF428Q96B54 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
ZNF428Q96B54 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
ZNF428Q96B54 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC23.16■■□□□ 1.3
ZNF428Q96B54 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
ZNF428Q96B54 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC23.16■■□□□ 1.3
ZNF428Q96B54 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
ZNF428Q96B54 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
ZNF428Q96B54 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
ZNF428Q96B54 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC23.16■■□□□ 1.3
ZNF428Q96B54 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
ZNF428Q96B54 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
ZNF428Q96B54 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC23.16■■□□□ 1.3
ZNF428Q96B54 TBCB-205ENST00000585746 875 ntTSL 3 BASIC23.16■■□□□ 1.3
ZNF428Q96B54 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
ZNF428Q96B54 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
ZNF428Q96B54 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms