Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
DEPDC4Q8N2C3 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
DEPDC4Q8N2C3 SNCG-201ENST00000348795 684 ntTSL 2 BASIC16.84■□□□□ 0.29
DEPDC4Q8N2C3 AC087499.1-201ENST00000418141 1075 ntBASIC16.84■□□□□ 0.29
DEPDC4Q8N2C3 PPP1R14BP5-201ENST00000440334 435 ntBASIC16.84■□□□□ 0.29
DEPDC4Q8N2C3 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
DEPDC4Q8N2C3 AC116562.2-201ENST00000507042 360 ntBASIC16.84■□□□□ 0.29
DEPDC4Q8N2C3 GLRB-205ENST00000512619 728 ntTSL 3 BASIC16.84■□□□□ 0.29
DEPDC4Q8N2C3 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC16.84■□□□□ 0.29
DEPDC4Q8N2C3 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
DEPDC4Q8N2C3 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
DEPDC4Q8N2C3 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
DEPDC4Q8N2C3 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC16.84■□□□□ 0.29
DEPDC4Q8N2C3 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
DEPDC4Q8N2C3 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
DEPDC4Q8N2C3 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC16.84■□□□□ 0.29
DEPDC4Q8N2C3 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
DEPDC4Q8N2C3 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
DEPDC4Q8N2C3 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
DEPDC4Q8N2C3 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
DEPDC4Q8N2C3 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
DEPDC4Q8N2C3 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
DEPDC4Q8N2C3 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.84■□□□□ 0.29
DEPDC4Q8N2C3 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
DEPDC4Q8N2C3 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
DEPDC4Q8N2C3 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
DEPDC4Q8N2C3 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
DEPDC4Q8N2C3 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC16.83■□□□□ 0.28
DEPDC4Q8N2C3 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
DEPDC4Q8N2C3 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
DEPDC4Q8N2C3 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
DEPDC4Q8N2C3 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
DEPDC4Q8N2C3 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
DEPDC4Q8N2C3 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
DEPDC4Q8N2C3 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
DEPDC4Q8N2C3 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
DEPDC4Q8N2C3 RBM17P1-201ENST00000453646 1190 ntBASIC16.83■□□□□ 0.28
DEPDC4Q8N2C3 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
DEPDC4Q8N2C3 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC16.83■□□□□ 0.28
DEPDC4Q8N2C3 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC16.83■□□□□ 0.28
DEPDC4Q8N2C3 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
DEPDC4Q8N2C3 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
DEPDC4Q8N2C3 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC16.83■□□□□ 0.28
DEPDC4Q8N2C3 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
DEPDC4Q8N2C3 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
DEPDC4Q8N2C3 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
DEPDC4Q8N2C3 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
DEPDC4Q8N2C3 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC16.82■□□□□ 0.28
DEPDC4Q8N2C3 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC16.82■□□□□ 0.28
DEPDC4Q8N2C3 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC16.82■□□□□ 0.28
DEPDC4Q8N2C3 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
DEPDC4Q8N2C3 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
DEPDC4Q8N2C3 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
DEPDC4Q8N2C3 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
DEPDC4Q8N2C3 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
DEPDC4Q8N2C3 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC16.82■□□□□ 0.28
DEPDC4Q8N2C3 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
DEPDC4Q8N2C3 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
DEPDC4Q8N2C3 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
DEPDC4Q8N2C3 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
DEPDC4Q8N2C3 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
DEPDC4Q8N2C3 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
DEPDC4Q8N2C3 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
DEPDC4Q8N2C3 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
DEPDC4Q8N2C3 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC16.82■□□□□ 0.28
DEPDC4Q8N2C3 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
DEPDC4Q8N2C3 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC16.82■□□□□ 0.28
DEPDC4Q8N2C3 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
DEPDC4Q8N2C3 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC16.82■□□□□ 0.28
DEPDC4Q8N2C3 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC16.82■□□□□ 0.28
DEPDC4Q8N2C3 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC16.82■□□□□ 0.28
DEPDC4Q8N2C3 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC16.82■□□□□ 0.28
DEPDC4Q8N2C3 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
DEPDC4Q8N2C3 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
DEPDC4Q8N2C3 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC16.82■□□□□ 0.28
DEPDC4Q8N2C3 GLDC-219ENST00000640208 420 ntTSL 2 BASIC16.82■□□□□ 0.28
DEPDC4Q8N2C3 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
DEPDC4Q8N2C3 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC16.82■□□□□ 0.28
DEPDC4Q8N2C3 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC16.82■□□□□ 0.28
DEPDC4Q8N2C3 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
DEPDC4Q8N2C3 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC16.82■□□□□ 0.28
DEPDC4Q8N2C3 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
DEPDC4Q8N2C3 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
DEPDC4Q8N2C3 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
DEPDC4Q8N2C3 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
DEPDC4Q8N2C3 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
DEPDC4Q8N2C3 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
DEPDC4Q8N2C3 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
DEPDC4Q8N2C3 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC16.82■□□□□ 0.28
DEPDC4Q8N2C3 HLA-DQB1-201ENST00000374943 1656 ntBASIC16.81■□□□□ 0.28
DEPDC4Q8N2C3 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
DEPDC4Q8N2C3 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
DEPDC4Q8N2C3 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
DEPDC4Q8N2C3 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
DEPDC4Q8N2C3 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
DEPDC4Q8N2C3 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
DEPDC4Q8N2C3 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC16.81■□□□□ 0.28
DEPDC4Q8N2C3 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
DEPDC4Q8N2C3 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC16.81■□□□□ 0.28
DEPDC4Q8N2C3 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 65.4 ms