Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CTR9Q6PD62 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CTR9Q6PD62 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CTR9Q6PD62 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
CTR9Q6PD62 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CTR9Q6PD62 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
CTR9Q6PD62 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC21.4■■□□□ 1.02
CTR9Q6PD62 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC21.4■■□□□ 1.02
CTR9Q6PD62 AC112698.1-201ENST00000510299 916 ntBASIC21.4■■□□□ 1.02
CTR9Q6PD62 BNIP3P18-201ENST00000593976 575 ntBASIC21.4■■□□□ 1.02
CTR9Q6PD62 CCNC-219ENST00000627680 896 ntTSL 5 BASIC21.4■■□□□ 1.02
CTR9Q6PD62 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CTR9Q6PD62 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
CTR9Q6PD62 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC21.4■■□□□ 1.02
CTR9Q6PD62 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CTR9Q6PD62 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CTR9Q6PD62 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC21.4■■□□□ 1.02
CTR9Q6PD62 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
CTR9Q6PD62 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CTR9Q6PD62 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC21.4■■□□□ 1.02
CTR9Q6PD62 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC21.39■■□□□ 1.02
CTR9Q6PD62 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
CTR9Q6PD62 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.02
CTR9Q6PD62 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
CTR9Q6PD62 POR-209ENST00000439269 1858 ntTSL 2 BASIC21.39■■□□□ 1.02
CTR9Q6PD62 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
CTR9Q6PD62 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC21.39■■□□□ 1.01
CTR9Q6PD62 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC21.39■■□□□ 1.01
CTR9Q6PD62 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CTR9Q6PD62 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC21.39■■□□□ 1.01
CTR9Q6PD62 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC21.39■■□□□ 1.01
CTR9Q6PD62 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC21.39■■□□□ 1.01
CTR9Q6PD62 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC21.39■■□□□ 1.01
CTR9Q6PD62 MINOS1P3-201ENST00000457048 203 ntBASIC21.39■■□□□ 1.01
CTR9Q6PD62 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
CTR9Q6PD62 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC21.39■■□□□ 1.01
CTR9Q6PD62 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC21.39■■□□□ 1.01
CTR9Q6PD62 FICD-205ENST00000552758 603 ntTSL 2 BASIC21.39■■□□□ 1.01
CTR9Q6PD62 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CTR9Q6PD62 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
CTR9Q6PD62 AL121772.3-201ENST00000610840 674 ntBASIC21.39■■□□□ 1.01
CTR9Q6PD62 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC21.39■■□□□ 1.01
CTR9Q6PD62 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CTR9Q6PD62 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CTR9Q6PD62 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC21.39■■□□□ 1.01
CTR9Q6PD62 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CTR9Q6PD62 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CTR9Q6PD62 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CTR9Q6PD62 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CTR9Q6PD62 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CTR9Q6PD62 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC21.39■■□□□ 1.01
CTR9Q6PD62 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CTR9Q6PD62 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
CTR9Q6PD62 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
CTR9Q6PD62 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CTR9Q6PD62 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
CTR9Q6PD62 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
CTR9Q6PD62 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CTR9Q6PD62 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC21.38■■□□□ 1.01
CTR9Q6PD62 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CTR9Q6PD62 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC21.38■■□□□ 1.01
CTR9Q6PD62 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
CTR9Q6PD62 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC21.38■■□□□ 1.01
CTR9Q6PD62 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC21.38■■□□□ 1.01
CTR9Q6PD62 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CTR9Q6PD62 AC091304.2-201ENST00000564639 760 ntBASIC21.38■■□□□ 1.01
CTR9Q6PD62 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC21.38■■□□□ 1.01
CTR9Q6PD62 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC21.38■■□□□ 1.01
CTR9Q6PD62 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC21.38■■□□□ 1.01
CTR9Q6PD62 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CTR9Q6PD62 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC21.38■■□□□ 1.01
CTR9Q6PD62 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC21.38■■□□□ 1.01
CTR9Q6PD62 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CTR9Q6PD62 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CTR9Q6PD62 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CTR9Q6PD62 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CTR9Q6PD62 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
CTR9Q6PD62 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
CTR9Q6PD62 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CTR9Q6PD62 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CTR9Q6PD62 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC21.37■■□□□ 1.01
CTR9Q6PD62 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC21.37■■□□□ 1.01
CTR9Q6PD62 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC21.37■■□□□ 1.01
CTR9Q6PD62 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
CTR9Q6PD62 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CTR9Q6PD62 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
CTR9Q6PD62 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CTR9Q6PD62 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CTR9Q6PD62 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
CTR9Q6PD62 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CTR9Q6PD62 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CTR9Q6PD62 PP7080-204ENST00000510714 601 ntTSL 3 BASIC21.37■■□□□ 1.01
CTR9Q6PD62 RN7SL510P-201ENST00000581311 263 ntBASIC21.37■■□□□ 1.01
CTR9Q6PD62 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CTR9Q6PD62 IFNL4P1-201ENST00000607083 540 ntBASIC21.37■■□□□ 1.01
CTR9Q6PD62 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC21.37■■□□□ 1.01
CTR9Q6PD62 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC21.37■■□□□ 1.01
CTR9Q6PD62 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
CTR9Q6PD62 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC21.37■■□□□ 1.01
CTR9Q6PD62 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms