Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
VPS13DQ5THJ4 MSRA-206ENST00000521209 814 ntTSL 3 BASIC12.08□□□□□ -0.48
VPS13DQ5THJ4 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
VPS13DQ5THJ4 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC12.08□□□□□ -0.48
VPS13DQ5THJ4 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC12.08□□□□□ -0.48
VPS13DQ5THJ4 ORC5-208ENST00000626700 344 ntTSL 3 BASIC12.08□□□□□ -0.48
VPS13DQ5THJ4 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
VPS13DQ5THJ4 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
VPS13DQ5THJ4 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
VPS13DQ5THJ4 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
VPS13DQ5THJ4 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
VPS13DQ5THJ4 SRP19-202ENST00000445150 833 ntTSL 2 BASIC12.07□□□□□ -0.48
VPS13DQ5THJ4 RNA5SP416-201ENST00000516838 111 ntBASIC12.07□□□□□ -0.48
VPS13DQ5THJ4 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
VPS13DQ5THJ4 COBL-210ENST00000632460 1941 ntTSL 5 BASIC12.07□□□□□ -0.48
VPS13DQ5THJ4 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC12.07□□□□□ -0.48
VPS13DQ5THJ4 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
VPS13DQ5THJ4 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
VPS13DQ5THJ4 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC12.07□□□□□ -0.48
VPS13DQ5THJ4 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
VPS13DQ5THJ4 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
VPS13DQ5THJ4 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC12.07□□□□□ -0.48
VPS13DQ5THJ4 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC12.07□□□□□ -0.48
VPS13DQ5THJ4 STK25P1-201ENST00000585406 838 ntBASIC12.07□□□□□ -0.48
VPS13DQ5THJ4 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
VPS13DQ5THJ4 AC006557.2-201ENST00000592985 1240 ntBASIC12.07□□□□□ -0.48
VPS13DQ5THJ4 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
VPS13DQ5THJ4 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
VPS13DQ5THJ4 GMCL1P1-201ENST00000463439 1581 ntBASIC12.07□□□□□ -0.48
VPS13DQ5THJ4 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC12.07□□□□□ -0.48
VPS13DQ5THJ4 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
VPS13DQ5THJ4 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC12.07□□□□□ -0.48
VPS13DQ5THJ4 MAL2-202ENST00000531508 892 ntTSL 3 BASIC12.07□□□□□ -0.48
VPS13DQ5THJ4 KRT19P2-202ENST00000557173 1012 ntBASIC12.07□□□□□ -0.48
VPS13DQ5THJ4 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC12.07□□□□□ -0.48
VPS13DQ5THJ4 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC12.07□□□□□ -0.48
VPS13DQ5THJ4 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC12.07□□□□□ -0.48
VPS13DQ5THJ4 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
VPS13DQ5THJ4 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
VPS13DQ5THJ4 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
VPS13DQ5THJ4 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
VPS13DQ5THJ4 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC12.07□□□□□ -0.48
VPS13DQ5THJ4 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC12.07□□□□□ -0.48
VPS13DQ5THJ4 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
VPS13DQ5THJ4 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
VPS13DQ5THJ4 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC12.07□□□□□ -0.48
VPS13DQ5THJ4 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC12.07□□□□□ -0.48
VPS13DQ5THJ4 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
VPS13DQ5THJ4 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC12.07□□□□□ -0.48
VPS13DQ5THJ4 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
VPS13DQ5THJ4 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13DQ5THJ4 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13DQ5THJ4 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC12.06□□□□□ -0.48
VPS13DQ5THJ4 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13DQ5THJ4 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC12.06□□□□□ -0.48
VPS13DQ5THJ4 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13DQ5THJ4 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC12.06□□□□□ -0.48
VPS13DQ5THJ4 KLK8-202ENST00000320838 456 ntTSL 5 BASIC12.06□□□□□ -0.48
VPS13DQ5THJ4 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC12.06□□□□□ -0.48
VPS13DQ5THJ4 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13DQ5THJ4 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC12.06□□□□□ -0.48
VPS13DQ5THJ4 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13DQ5THJ4 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13DQ5THJ4 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13DQ5THJ4 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC12.06□□□□□ -0.48
VPS13DQ5THJ4 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
VPS13DQ5THJ4 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC12.06□□□□□ -0.48
VPS13DQ5THJ4 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13DQ5THJ4 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13DQ5THJ4 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC12.06□□□□□ -0.48
VPS13DQ5THJ4 BCRP1-201ENST00000444246 691 ntBASIC12.06□□□□□ -0.48
VPS13DQ5THJ4 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC12.06□□□□□ -0.48
VPS13DQ5THJ4 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC12.06□□□□□ -0.48
VPS13DQ5THJ4 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC12.06□□□□□ -0.48
VPS13DQ5THJ4 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13DQ5THJ4 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC12.06□□□□□ -0.48
VPS13DQ5THJ4 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13DQ5THJ4 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13DQ5THJ4 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13DQ5THJ4 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13DQ5THJ4 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC12.06□□□□□ -0.48
VPS13DQ5THJ4 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC12.06□□□□□ -0.48
VPS13DQ5THJ4 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC12.06□□□□□ -0.48
VPS13DQ5THJ4 POLD4-207ENST00000531239 584 ntTSL 2 BASIC12.06□□□□□ -0.48
VPS13DQ5THJ4 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC12.06□□□□□ -0.48
VPS13DQ5THJ4 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13DQ5THJ4 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13DQ5THJ4 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC12.05□□□□□ -0.48
VPS13DQ5THJ4 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
VPS13DQ5THJ4 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC12.05□□□□□ -0.48
VPS13DQ5THJ4 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC12.05□□□□□ -0.48
VPS13DQ5THJ4 PNKD-204ENST00000436005 978 ntTSL 5 BASIC12.05□□□□□ -0.48
VPS13DQ5THJ4 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC12.05□□□□□ -0.48
VPS13DQ5THJ4 TCAP-202ENST00000578283 583 ntTSL 5 BASIC12.05□□□□□ -0.48
VPS13DQ5THJ4 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC12.05□□□□□ -0.48
VPS13DQ5THJ4 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC12.05□□□□□ -0.48
VPS13DQ5THJ4 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
VPS13DQ5THJ4 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
VPS13DQ5THJ4 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC12.05□□□□□ -0.48
VPS13DQ5THJ4 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC12.05□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms