Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTCHD3Q3KNS1 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTCHD3Q3KNS1 HBZP1-201ENST00000354915 429 ntBASIC17.67■□□□□ 0.42
PTCHD3Q3KNS1 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTCHD3Q3KNS1 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.67■□□□□ 0.42
PTCHD3Q3KNS1 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTCHD3Q3KNS1 SPDYE13P-201ENST00000445314 798 ntBASIC17.67■□□□□ 0.42
PTCHD3Q3KNS1 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTCHD3Q3KNS1 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC17.67■□□□□ 0.42
PTCHD3Q3KNS1 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
PTCHD3Q3KNS1 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC17.67■□□□□ 0.42
PTCHD3Q3KNS1 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
PTCHD3Q3KNS1 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTCHD3Q3KNS1 WAC-202ENST00000347934 2839 ntTSL 5 BASIC17.67■□□□□ 0.42
PTCHD3Q3KNS1 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTCHD3Q3KNS1 AR-207ENST00000612010 3896 ntTSL 5 BASIC17.67■□□□□ 0.42
PTCHD3Q3KNS1 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC17.67■□□□□ 0.42
PTCHD3Q3KNS1 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTCHD3Q3KNS1 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTCHD3Q3KNS1 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTCHD3Q3KNS1 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC17.67■□□□□ 0.42
PTCHD3Q3KNS1 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PTCHD3Q3KNS1 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
PTCHD3Q3KNS1 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PTCHD3Q3KNS1 AC068880.1-201ENST00000507289 2297 ntBASIC17.67■□□□□ 0.42
PTCHD3Q3KNS1 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTCHD3Q3KNS1 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTCHD3Q3KNS1 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTCHD3Q3KNS1 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
PTCHD3Q3KNS1 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTCHD3Q3KNS1 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC17.66■□□□□ 0.42
PTCHD3Q3KNS1 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC17.66■□□□□ 0.42
PTCHD3Q3KNS1 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTCHD3Q3KNS1 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTCHD3Q3KNS1 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC17.66■□□□□ 0.42
PTCHD3Q3KNS1 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PTCHD3Q3KNS1 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTCHD3Q3KNS1 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
PTCHD3Q3KNS1 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTCHD3Q3KNS1 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTCHD3Q3KNS1 STK4-201ENST00000372801 2038 ntTSL 2 BASIC17.66■□□□□ 0.42
PTCHD3Q3KNS1 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTCHD3Q3KNS1 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PTCHD3Q3KNS1 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTCHD3Q3KNS1 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTCHD3Q3KNS1 KIRREL3-AS3-201ENST00000404882 831 ntBASIC17.66■□□□□ 0.42
PTCHD3Q3KNS1 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTCHD3Q3KNS1 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTCHD3Q3KNS1 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC17.66■□□□□ 0.42
PTCHD3Q3KNS1 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC17.66■□□□□ 0.42
PTCHD3Q3KNS1 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC17.66■□□□□ 0.42
PTCHD3Q3KNS1 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC17.66■□□□□ 0.42
PTCHD3Q3KNS1 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC17.66■□□□□ 0.42
PTCHD3Q3KNS1 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PTCHD3Q3KNS1 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PTCHD3Q3KNS1 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17.66■□□□□ 0.42
PTCHD3Q3KNS1 AP000997.3-201ENST00000623333 2250 ntBASIC17.66■□□□□ 0.42
PTCHD3Q3KNS1 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PTCHD3Q3KNS1 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PTCHD3Q3KNS1 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PTCHD3Q3KNS1 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.66■□□□□ 0.42
PTCHD3Q3KNS1 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PTCHD3Q3KNS1 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
PTCHD3Q3KNS1 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTCHD3Q3KNS1 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTCHD3Q3KNS1 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTCHD3Q3KNS1 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTCHD3Q3KNS1 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.65■□□□□ 0.42
PTCHD3Q3KNS1 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTCHD3Q3KNS1 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
PTCHD3Q3KNS1 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTCHD3Q3KNS1 AC008764.6-201ENST00000595909 2069 ntBASIC17.65■□□□□ 0.42
PTCHD3Q3KNS1 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PTCHD3Q3KNS1 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC17.65■□□□□ 0.42
PTCHD3Q3KNS1 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PTCHD3Q3KNS1 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.65■□□□□ 0.42
PTCHD3Q3KNS1 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
PTCHD3Q3KNS1 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTCHD3Q3KNS1 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTCHD3Q3KNS1 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTCHD3Q3KNS1 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC17.65■□□□□ 0.42
PTCHD3Q3KNS1 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PTCHD3Q3KNS1 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC17.65■□□□□ 0.42
PTCHD3Q3KNS1 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC17.65■□□□□ 0.42
PTCHD3Q3KNS1 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PTCHD3Q3KNS1 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTCHD3Q3KNS1 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.65■□□□□ 0.42
PTCHD3Q3KNS1 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.65■□□□□ 0.42
PTCHD3Q3KNS1 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTCHD3Q3KNS1 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
PTCHD3Q3KNS1 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC17.65■□□□□ 0.42
PTCHD3Q3KNS1 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTCHD3Q3KNS1 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTCHD3Q3KNS1 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTCHD3Q3KNS1 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.65■□□□□ 0.42
PTCHD3Q3KNS1 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTCHD3Q3KNS1 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTCHD3Q3KNS1 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTCHD3Q3KNS1 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.64■□□□□ 0.42
PTCHD3Q3KNS1 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 62.2 ms