Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SHROOM1Q2M3G4 KIRREL3-AS3-201ENST00000404882 831 ntBASIC21■□□□□ 0.95
SHROOM1Q2M3G4 PMS2P1-201ENST00000431037 1228 ntBASIC21■□□□□ 0.95
SHROOM1Q2M3G4 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC21■□□□□ 0.95
SHROOM1Q2M3G4 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC21■□□□□ 0.95
SHROOM1Q2M3G4 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
SHROOM1Q2M3G4 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC21■□□□□ 0.95
SHROOM1Q2M3G4 NKAPP1-205ENST00000585790 367 ntBASIC21■□□□□ 0.95
SHROOM1Q2M3G4 AC004817.3-201ENST00000602957 2129 ntBASIC21■□□□□ 0.95
SHROOM1Q2M3G4 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC21■□□□□ 0.95
SHROOM1Q2M3G4 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC21■□□□□ 0.95
SHROOM1Q2M3G4 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
SHROOM1Q2M3G4 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SHROOM1Q2M3G4 WIZP1-201ENST00000531444 2299 ntBASIC21■□□□□ 0.95
SHROOM1Q2M3G4 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
SHROOM1Q2M3G4 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC21■□□□□ 0.95
SHROOM1Q2M3G4 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC21■□□□□ 0.95
SHROOM1Q2M3G4 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
SHROOM1Q2M3G4 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
SHROOM1Q2M3G4 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC21■□□□□ 0.95
SHROOM1Q2M3G4 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC21■□□□□ 0.95
SHROOM1Q2M3G4 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
SHROOM1Q2M3G4 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
SHROOM1Q2M3G4 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
SHROOM1Q2M3G4 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
SHROOM1Q2M3G4 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SHROOM1Q2M3G4 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC20.99■□□□□ 0.95
SHROOM1Q2M3G4 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
SHROOM1Q2M3G4 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
SHROOM1Q2M3G4 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SHROOM1Q2M3G4 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SHROOM1Q2M3G4 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC20.99■□□□□ 0.95
SHROOM1Q2M3G4 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
SHROOM1Q2M3G4 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
SHROOM1Q2M3G4 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC20.99■□□□□ 0.95
SHROOM1Q2M3G4 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SHROOM1Q2M3G4 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC20.99■□□□□ 0.95
SHROOM1Q2M3G4 PNMT-203ENST00000581428 677 ntTSL 2 BASIC20.99■□□□□ 0.95
SHROOM1Q2M3G4 CYGB-205ENST00000590175 830 ntTSL 3 BASIC20.99■□□□□ 0.95
SHROOM1Q2M3G4 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
SHROOM1Q2M3G4 GPALPP1-207ENST00000611650 899 ntBASIC20.99■□□□□ 0.95
SHROOM1Q2M3G4 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SHROOM1Q2M3G4 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC20.99■□□□□ 0.95
SHROOM1Q2M3G4 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SHROOM1Q2M3G4 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC20.99■□□□□ 0.95
SHROOM1Q2M3G4 AC093503.3-201ENST00000624917 2352 ntBASIC20.99■□□□□ 0.95
SHROOM1Q2M3G4 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SHROOM1Q2M3G4 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SHROOM1Q2M3G4 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC20.98■□□□□ 0.95
SHROOM1Q2M3G4 AL356309.3-201ENST00000624132 1934 ntBASIC20.98■□□□□ 0.95
SHROOM1Q2M3G4 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SHROOM1Q2M3G4 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SHROOM1Q2M3G4 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
SHROOM1Q2M3G4 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SHROOM1Q2M3G4 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC20.98■□□□□ 0.95
SHROOM1Q2M3G4 CENPM-204ENST00000402420 688 ntTSL 5 BASIC20.98■□□□□ 0.95
SHROOM1Q2M3G4 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
SHROOM1Q2M3G4 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC20.98■□□□□ 0.95
SHROOM1Q2M3G4 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC20.98■□□□□ 0.95
SHROOM1Q2M3G4 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC20.98■□□□□ 0.95
SHROOM1Q2M3G4 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC20.98■□□□□ 0.95
SHROOM1Q2M3G4 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC20.98■□□□□ 0.95
SHROOM1Q2M3G4 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SHROOM1Q2M3G4 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
SHROOM1Q2M3G4 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SHROOM1Q2M3G4 AC073592.3-201ENST00000625118 1834 ntBASIC20.98■□□□□ 0.95
SHROOM1Q2M3G4 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC20.98■□□□□ 0.95
SHROOM1Q2M3G4 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC20.98■□□□□ 0.95
SHROOM1Q2M3G4 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SHROOM1Q2M3G4 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SHROOM1Q2M3G4 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
SHROOM1Q2M3G4 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
SHROOM1Q2M3G4 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
SHROOM1Q2M3G4 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
SHROOM1Q2M3G4 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
SHROOM1Q2M3G4 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
SHROOM1Q2M3G4 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SHROOM1Q2M3G4 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
SHROOM1Q2M3G4 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SHROOM1Q2M3G4 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SHROOM1Q2M3G4 IGHV3-22-201ENST00000520721 359 ntBASIC20.97■□□□□ 0.95
SHROOM1Q2M3G4 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC20.97■□□□□ 0.95
SHROOM1Q2M3G4 AP000867.4-201ENST00000641616 219 ntBASIC20.97■□□□□ 0.95
SHROOM1Q2M3G4 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SHROOM1Q2M3G4 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC20.97■□□□□ 0.95
SHROOM1Q2M3G4 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC20.97■□□□□ 0.95
SHROOM1Q2M3G4 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SHROOM1Q2M3G4 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SHROOM1Q2M3G4 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SHROOM1Q2M3G4 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC20.96■□□□□ 0.95
SHROOM1Q2M3G4 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC20.96■□□□□ 0.95
SHROOM1Q2M3G4 AC120498.9-201ENST00000339021 3867 ntBASIC20.96■□□□□ 0.95
SHROOM1Q2M3G4 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
SHROOM1Q2M3G4 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC20.96■□□□□ 0.95
SHROOM1Q2M3G4 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SHROOM1Q2M3G4 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
SHROOM1Q2M3G4 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC20.96■□□□□ 0.95
SHROOM1Q2M3G4 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SHROOM1Q2M3G4 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
SHROOM1Q2M3G4 BX005266.1-201ENST00000473402 457 ntBASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms