Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC12.84□□□□□ -0.35
COL7A1Q02388 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
COL7A1Q02388 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL7A1Q02388 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC12.84□□□□□ -0.35
COL7A1Q02388 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL7A1Q02388 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL7A1Q02388 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL7A1Q02388 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
COL7A1Q02388 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL7A1Q02388 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
COL7A1Q02388 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL7A1Q02388 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC12.84□□□□□ -0.35
COL7A1Q02388 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC12.84□□□□□ -0.35
COL7A1Q02388 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC12.84□□□□□ -0.35
COL7A1Q02388 MAL2-202ENST00000531508 892 ntTSL 3 BASIC12.84□□□□□ -0.35
COL7A1Q02388 OR7E47P-204ENST00000575924 449 ntBASIC12.84□□□□□ -0.35
COL7A1Q02388 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
COL7A1Q02388 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL7A1Q02388 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
COL7A1Q02388 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC12.84□□□□□ -0.35
COL7A1Q02388 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC12.84□□□□□ -0.35
COL7A1Q02388 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL7A1Q02388 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC12.84□□□□□ -0.35
COL7A1Q02388 GK-202ENST00000378941 458 ntTSL 3 BASIC12.84□□□□□ -0.35
COL7A1Q02388 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
COL7A1Q02388 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL7A1Q02388 RHOQP3-201ENST00000437982 621 ntBASIC12.84□□□□□ -0.35
COL7A1Q02388 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL7A1Q02388 ADM-208ENST00000534464 1640 ntTSL 2 BASIC12.84□□□□□ -0.35
COL7A1Q02388 SNAI3-AS1-205ENST00000568633 2096 ntBASIC12.83□□□□□ -0.35
COL7A1Q02388 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC12.83□□□□□ -0.35
COL7A1Q02388 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC12.83□□□□□ -0.35
COL7A1Q02388 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
COL7A1Q02388 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC12.83□□□□□ -0.35
COL7A1Q02388 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC12.83□□□□□ -0.35
COL7A1Q02388 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
COL7A1Q02388 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC12.83□□□□□ -0.36
COL7A1Q02388 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC12.83□□□□□ -0.36
COL7A1Q02388 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC12.83□□□□□ -0.36
COL7A1Q02388 KRT18P65-201ENST00000439811 1286 ntBASIC12.83□□□□□ -0.36
COL7A1Q02388 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC12.83□□□□□ -0.36
COL7A1Q02388 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC12.83□□□□□ -0.36
COL7A1Q02388 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC12.83□□□□□ -0.36
COL7A1Q02388 NOP2-220ENST00000545915 630 ntTSL 2 BASIC12.83□□□□□ -0.36
COL7A1Q02388 AC010507.1-201ENST00000633895 436 ntBASIC12.83□□□□□ -0.36
COL7A1Q02388 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
COL7A1Q02388 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
COL7A1Q02388 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC12.83□□□□□ -0.36
COL7A1Q02388 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL7A1Q02388 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
COL7A1Q02388 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
COL7A1Q02388 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
COL7A1Q02388 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC12.83□□□□□ -0.36
COL7A1Q02388 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL7A1Q02388 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL7A1Q02388 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC12.83□□□□□ -0.36
COL7A1Q02388 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL7A1Q02388 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL7A1Q02388 NEK7-201ENST00000367383 586 ntTSL 2 BASIC12.83□□□□□ -0.36
COL7A1Q02388 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC12.83□□□□□ -0.36
COL7A1Q02388 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC12.83□□□□□ -0.36
COL7A1Q02388 CD9-202ENST00000382515 1229 ntTSL 5 BASIC12.83□□□□□ -0.36
COL7A1Q02388 AC004461.1-201ENST00000412461 403 ntBASIC12.83□□□□□ -0.36
COL7A1Q02388 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL7A1Q02388 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
COL7A1Q02388 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC12.83□□□□□ -0.36
COL7A1Q02388 IGHV3OR16-6-201ENST00000568775 360 ntBASIC12.83□□□□□ -0.36
COL7A1Q02388 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC12.83□□□□□ -0.36
COL7A1Q02388 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL7A1Q02388 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
COL7A1Q02388 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC12.83□□□□□ -0.36
COL7A1Q02388 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
COL7A1Q02388 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
COL7A1Q02388 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
COL7A1Q02388 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
COL7A1Q02388 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
COL7A1Q02388 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL7A1Q02388 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL7A1Q02388 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC12.82□□□□□ -0.36
COL7A1Q02388 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC12.82□□□□□ -0.36
COL7A1Q02388 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL7A1Q02388 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL7A1Q02388 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC12.82□□□□□ -0.36
COL7A1Q02388 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC12.82□□□□□ -0.36
COL7A1Q02388 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC12.82□□□□□ -0.36
COL7A1Q02388 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL7A1Q02388 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC12.82□□□□□ -0.36
COL7A1Q02388 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC12.82□□□□□ -0.36
COL7A1Q02388 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC12.82□□□□□ -0.36
COL7A1Q02388 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC12.82□□□□□ -0.36
COL7A1Q02388 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC12.82□□□□□ -0.36
COL7A1Q02388 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC12.82□□□□□ -0.36
COL7A1Q02388 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC12.82□□□□□ -0.36
COL7A1Q02388 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC12.82□□□□□ -0.36
COL7A1Q02388 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC12.82□□□□□ -0.36
COL7A1Q02388 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC12.82□□□□□ -0.36
COL7A1Q02388 AC023141.5-201ENST00000458585 616 ntBASIC12.82□□□□□ -0.36
COL7A1Q02388 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC12.82□□□□□ -0.36
COL7A1Q02388 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC12.82□□□□□ -0.36
COL7A1Q02388 DUT-210ENST00000559935 569 ntTSL 3 BASIC12.82□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms