Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
EPHB3P54753 CROCCP3-202ENST00000420820 1947 ntBASIC18.82■□□□□ 0.6
EPHB3P54753 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC18.82■□□□□ 0.6
EPHB3P54753 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
EPHB3P54753 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
EPHB3P54753 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
EPHB3P54753 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
EPHB3P54753 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC18.81■□□□□ 0.6
EPHB3P54753 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
EPHB3P54753 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC18.81■□□□□ 0.6
EPHB3P54753 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
EPHB3P54753 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
EPHB3P54753 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC18.81■□□□□ 0.6
EPHB3P54753 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC18.81■□□□□ 0.6
EPHB3P54753 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC18.81■□□□□ 0.6
EPHB3P54753 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
EPHB3P54753 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
EPHB3P54753 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
EPHB3P54753 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
EPHB3P54753 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
EPHB3P54753 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
EPHB3P54753 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
EPHB3P54753 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
EPHB3P54753 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
EPHB3P54753 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC18.81■□□□□ 0.6
EPHB3P54753 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
EPHB3P54753 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
EPHB3P54753 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC18.81■□□□□ 0.6
EPHB3P54753 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
EPHB3P54753 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
EPHB3P54753 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
EPHB3P54753 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC18.81■□□□□ 0.6
EPHB3P54753 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC18.81■□□□□ 0.6
EPHB3P54753 AC073592.3-201ENST00000625118 1834 ntBASIC18.81■□□□□ 0.6
EPHB3P54753 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
EPHB3P54753 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
EPHB3P54753 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
EPHB3P54753 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
EPHB3P54753 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
EPHB3P54753 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC18.8■□□□□ 0.6
EPHB3P54753 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
EPHB3P54753 IL9RP2-201ENST00000423948 1312 ntBASIC18.8■□□□□ 0.6
EPHB3P54753 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC18.8■□□□□ 0.6
EPHB3P54753 AC097374.2-201ENST00000618617 1306 ntBASIC18.8■□□□□ 0.6
EPHB3P54753 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
EPHB3P54753 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
EPHB3P54753 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
EPHB3P54753 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
EPHB3P54753 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
EPHB3P54753 RPS2P28-201ENST00000314255 741 ntBASIC18.8■□□□□ 0.6
EPHB3P54753 CD9-202ENST00000382515 1229 ntTSL 5 BASIC18.8■□□□□ 0.6
EPHB3P54753 FAM220CP-201ENST00000395253 831 ntBASIC18.8■□□□□ 0.6
EPHB3P54753 CTNS-203ENST00000399306 803 ntTSL 3 BASIC18.8■□□□□ 0.6
EPHB3P54753 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
EPHB3P54753 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC18.8■□□□□ 0.6
EPHB3P54753 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
EPHB3P54753 AC018712.1-201ENST00000455767 687 ntBASIC18.8■□□□□ 0.6
EPHB3P54753 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC18.8■□□□□ 0.6
EPHB3P54753 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC18.8■□□□□ 0.6
EPHB3P54753 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC18.8■□□□□ 0.6
EPHB3P54753 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC18.8■□□□□ 0.6
EPHB3P54753 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC18.8■□□□□ 0.6
EPHB3P54753 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC18.8■□□□□ 0.6
EPHB3P54753 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC18.8■□□□□ 0.6
EPHB3P54753 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
EPHB3P54753 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC18.8■□□□□ 0.6
EPHB3P54753 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
EPHB3P54753 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC18.8■□□□□ 0.6
EPHB3P54753 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
EPHB3P54753 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
EPHB3P54753 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
EPHB3P54753 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
EPHB3P54753 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
EPHB3P54753 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
EPHB3P54753 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC18.79■□□□□ 0.6
EPHB3P54753 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
EPHB3P54753 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
EPHB3P54753 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC18.79■□□□□ 0.6
EPHB3P54753 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC18.79■□□□□ 0.6
EPHB3P54753 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC18.79■□□□□ 0.6
EPHB3P54753 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC18.79■□□□□ 0.6
EPHB3P54753 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC18.79■□□□□ 0.6
EPHB3P54753 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC18.79■□□□□ 0.6
EPHB3P54753 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC18.79■□□□□ 0.6
EPHB3P54753 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC18.79■□□□□ 0.6
EPHB3P54753 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
EPHB3P54753 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
EPHB3P54753 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
EPHB3P54753 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
EPHB3P54753 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
EPHB3P54753 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC18.79■□□□□ 0.6
EPHB3P54753 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
EPHB3P54753 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
EPHB3P54753 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
EPHB3P54753 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
EPHB3P54753 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
EPHB3P54753 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
EPHB3P54753 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
EPHB3P54753 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC18.78■□□□□ 0.6
EPHB3P54753 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms