Protein–RNA interactions for Protein: P35453

HOXD13, Homeobox protein Hox-D13, humanhuman

Predictions only

Length 343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD13P35453 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HOXD13P35453 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
HOXD13P35453 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HOXD13P35453 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC19.72■□□□□ 0.75
HOXD13P35453 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
HOXD13P35453 NME9-203ENST00000383180 2133 ntTSL 2 BASIC19.72■□□□□ 0.75
HOXD13P35453 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
HOXD13P35453 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXD13P35453 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXD13P35453 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HOXD13P35453 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXD13P35453 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXD13P35453 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.71■□□□□ 0.75
HOXD13P35453 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
HOXD13P35453 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXD13P35453 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXD13P35453 BAALC-202ENST00000306391 243 ntTSL 5 BASIC19.71■□□□□ 0.75
HOXD13P35453 BAALC-204ENST00000330955 222 ntTSL 5 BASIC19.71■□□□□ 0.75
HOXD13P35453 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXD13P35453 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC19.71■□□□□ 0.75
HOXD13P35453 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HOXD13P35453 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC19.71■□□□□ 0.75
HOXD13P35453 AC112698.1-201ENST00000510299 916 ntBASIC19.71■□□□□ 0.75
HOXD13P35453 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC19.71■□□□□ 0.75
HOXD13P35453 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC19.71■□□□□ 0.75
HOXD13P35453 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC19.71■□□□□ 0.75
HOXD13P35453 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC19.71■□□□□ 0.75
HOXD13P35453 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
HOXD13P35453 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXD13P35453 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXD13P35453 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC19.71■□□□□ 0.75
HOXD13P35453 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXD13P35453 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC19.7■□□□□ 0.74
HOXD13P35453 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HOXD13P35453 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HOXD13P35453 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC19.7■□□□□ 0.74
HOXD13P35453 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXD13P35453 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HOXD13P35453 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXD13P35453 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HOXD13P35453 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC19.7■□□□□ 0.74
HOXD13P35453 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXD13P35453 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXD13P35453 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXD13P35453 MIR1224-201ENST00000408193 85 ntBASIC19.7■□□□□ 0.74
HOXD13P35453 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC19.7■□□□□ 0.74
HOXD13P35453 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC19.7■□□□□ 0.74
HOXD13P35453 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC19.7■□□□□ 0.74
HOXD13P35453 AC087388.1-201ENST00000571370 1112 ntBASIC19.7■□□□□ 0.74
HOXD13P35453 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC19.7■□□□□ 0.74
HOXD13P35453 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HOXD13P35453 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXD13P35453 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC19.7■□□□□ 0.74
HOXD13P35453 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC19.7■□□□□ 0.74
HOXD13P35453 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC19.7■□□□□ 0.74
HOXD13P35453 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXD13P35453 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC19.7■□□□□ 0.74
HOXD13P35453 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC19.7■□□□□ 0.74
HOXD13P35453 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXD13P35453 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC19.7■□□□□ 0.74
HOXD13P35453 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC19.7■□□□□ 0.74
HOXD13P35453 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXD13P35453 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HOXD13P35453 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HOXD13P35453 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC19.69■□□□□ 0.74
HOXD13P35453 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
HOXD13P35453 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC19.69■□□□□ 0.74
HOXD13P35453 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HOXD13P35453 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC19.69■□□□□ 0.74
HOXD13P35453 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HOXD13P35453 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HOXD13P35453 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HOXD13P35453 DDT-203ENST00000403754 569 ntTSL 3 BASIC19.69■□□□□ 0.74
HOXD13P35453 PCED1CP-201ENST00000419887 785 ntBASIC19.69■□□□□ 0.74
HOXD13P35453 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC19.69■□□□□ 0.74
HOXD13P35453 DDT-206ENST00000430101 573 ntTSL 2 BASIC19.69■□□□□ 0.74
HOXD13P35453 MTCL1P1-201ENST00000446207 792 ntBASIC19.69■□□□□ 0.74
HOXD13P35453 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC19.69■□□□□ 0.74
HOXD13P35453 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC19.69■□□□□ 0.74
HOXD13P35453 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC19.69■□□□□ 0.74
HOXD13P35453 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
HOXD13P35453 VPS72-207ENST00000640458 689 ntTSL 5 BASIC19.69■□□□□ 0.74
HOXD13P35453 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC19.69■□□□□ 0.74
HOXD13P35453 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC19.69■□□□□ 0.74
HOXD13P35453 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HOXD13P35453 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HOXD13P35453 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HOXD13P35453 AC022898.2-201ENST00000616822 1312 ntBASIC19.69■□□□□ 0.74
HOXD13P35453 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HOXD13P35453 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
HOXD13P35453 AC009949.1-201ENST00000623048 1830 ntBASIC19.69■□□□□ 0.74
HOXD13P35453 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HOXD13P35453 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HOXD13P35453 AC016734.2-201ENST00000624325 1377 ntBASIC19.69■□□□□ 0.74
HOXD13P35453 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
HOXD13P35453 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
HOXD13P35453 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXD13P35453 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXD13P35453 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXD13P35453 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms