Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL8A1P27658 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL8A1P27658 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
COL8A1P27658 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL8A1P27658 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
COL8A1P27658 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC15.73■□□□□ 0.11
COL8A1P27658 TAF8-206ENST00000472818 719 ntTSL 2 BASIC15.73■□□□□ 0.11
COL8A1P27658 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC15.73■□□□□ 0.11
COL8A1P27658 AC018845.2-201ENST00000568326 409 ntBASIC15.73■□□□□ 0.11
COL8A1P27658 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
COL8A1P27658 AL035252.4-201ENST00000624174 288 ntBASIC15.73■□□□□ 0.11
COL8A1P27658 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC15.73■□□□□ 0.11
COL8A1P27658 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
COL8A1P27658 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL8A1P27658 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC15.73■□□□□ 0.11
COL8A1P27658 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
COL8A1P27658 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL8A1P27658 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL8A1P27658 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
COL8A1P27658 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL8A1P27658 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
COL8A1P27658 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC15.72■□□□□ 0.11
COL8A1P27658 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL8A1P27658 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL8A1P27658 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
COL8A1P27658 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
COL8A1P27658 Z82202.1-201ENST00000623446 1880 ntBASIC15.72■□□□□ 0.11
COL8A1P27658 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
COL8A1P27658 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL8A1P27658 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL8A1P27658 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL8A1P27658 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL8A1P27658 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
COL8A1P27658 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
COL8A1P27658 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
COL8A1P27658 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
COL8A1P27658 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC15.72■□□□□ 0.11
COL8A1P27658 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC15.72■□□□□ 0.11
COL8A1P27658 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC15.72■□□□□ 0.11
COL8A1P27658 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC15.72■□□□□ 0.11
COL8A1P27658 CYGB-205ENST00000590175 830 ntTSL 3 BASIC15.72■□□□□ 0.11
COL8A1P27658 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC15.72■□□□□ 0.11
COL8A1P27658 C20orf181-201ENST00000623918 480 ntBASIC15.72■□□□□ 0.11
COL8A1P27658 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC15.72■□□□□ 0.11
COL8A1P27658 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC15.72■□□□□ 0.11
COL8A1P27658 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC15.72■□□□□ 0.11
COL8A1P27658 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
COL8A1P27658 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL8A1P27658 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL8A1P27658 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
COL8A1P27658 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
COL8A1P27658 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
COL8A1P27658 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
COL8A1P27658 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
COL8A1P27658 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL8A1P27658 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL8A1P27658 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL8A1P27658 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC15.71■□□□□ 0.11
COL8A1P27658 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL8A1P27658 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL8A1P27658 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
COL8A1P27658 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL8A1P27658 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
COL8A1P27658 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL8A1P27658 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
COL8A1P27658 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL8A1P27658 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC15.71■□□□□ 0.11
COL8A1P27658 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL8A1P27658 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC15.71■□□□□ 0.11
COL8A1P27658 ATP6V0CP3-201ENST00000417255 467 ntBASIC15.71■□□□□ 0.11
COL8A1P27658 LAGE3P1-201ENST00000425356 484 ntBASIC15.71■□□□□ 0.11
COL8A1P27658 DANCR-204ENST00000444958 709 ntTSL 3 BASIC15.71■□□□□ 0.11
COL8A1P27658 BX005266.1-201ENST00000473402 457 ntBASIC15.71■□□□□ 0.11
COL8A1P27658 RBM7-207ENST00000544582 692 ntTSL 3 BASIC15.71■□□□□ 0.11
COL8A1P27658 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC15.71■□□□□ 0.11
COL8A1P27658 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
COL8A1P27658 MIR4745-201ENST00000577608 62 ntBASIC15.71■□□□□ 0.11
COL8A1P27658 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC15.71■□□□□ 0.11
COL8A1P27658 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC15.71■□□□□ 0.11
COL8A1P27658 AL513190.1-201ENST00000621254 727 ntBASIC15.71■□□□□ 0.11
COL8A1P27658 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
COL8A1P27658 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC15.71■□□□□ 0.11
COL8A1P27658 AC005593.1-201ENST00000624894 515 ntBASIC15.71■□□□□ 0.11
COL8A1P27658 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
COL8A1P27658 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL8A1P27658 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
COL8A1P27658 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC15.71■□□□□ 0.11
COL8A1P27658 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.1
COL8A1P27658 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
COL8A1P27658 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
COL8A1P27658 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC15.7■□□□□ 0.1
COL8A1P27658 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
COL8A1P27658 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC15.7■□□□□ 0.1
COL8A1P27658 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL8A1P27658 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL8A1P27658 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC15.7■□□□□ 0.1
COL8A1P27658 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL8A1P27658 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL8A1P27658 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL8A1P27658 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms