Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC18.17■□□□□ 0.5
VIMP08670 CFL2-205ENST00000555765 632 ntTSL 2 BASIC18.17■□□□□ 0.5
VIMP08670 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.5
VIMP08670 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VIMP08670 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VIMP08670 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
VIMP08670 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
VIMP08670 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VIMP08670 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
VIMP08670 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC18.17■□□□□ 0.5
VIMP08670 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.5
VIMP08670 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VIMP08670 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VIMP08670 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
VIMP08670 BOC-212ENST00000485230 2173 ntTSL 2 BASIC18.17■□□□□ 0.5
VIMP08670 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
VIMP08670 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC18.17■□□□□ 0.5
VIMP08670 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC18.17■□□□□ 0.5
VIMP08670 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VIMP08670 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VIMP08670 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC18.16■□□□□ 0.5
VIMP08670 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
VIMP08670 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
VIMP08670 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC18.16■□□□□ 0.5
VIMP08670 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VIMP08670 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
VIMP08670 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VIMP08670 KRT8P11-201ENST00000409686 1436 ntBASIC18.16■□□□□ 0.5
VIMP08670 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
VIMP08670 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VIMP08670 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18.16■□□□□ 0.5
VIMP08670 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
VIMP08670 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VIMP08670 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
VIMP08670 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VIMP08670 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VIMP08670 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC18.16■□□□□ 0.5
VIMP08670 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VIMP08670 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VIMP08670 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
VIMP08670 KRT18P41-201ENST00000518924 1277 ntBASIC18.16■□□□□ 0.5
VIMP08670 REXO2-208ENST00000539754 791 ntTSL 2 BASIC18.16■□□□□ 0.5
VIMP08670 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC18.16■□□□□ 0.5
VIMP08670 AC120498.8-201ENST00000614275 531 ntBASIC18.16■□□□□ 0.5
VIMP08670 ANKRD20A6P-201ENST00000618763 204 ntBASIC18.16■□□□□ 0.5
VIMP08670 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VIMP08670 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VIMP08670 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VIMP08670 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VIMP08670 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VIMP08670 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
VIMP08670 AC092368.3-202ENST00000574180 1591 ntBASIC18.16■□□□□ 0.5
VIMP08670 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VIMP08670 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC18.16■□□□□ 0.5
VIMP08670 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC18.16■□□□□ 0.5
VIMP08670 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VIMP08670 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VIMP08670 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
VIMP08670 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
VIMP08670 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VIMP08670 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
VIMP08670 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
VIMP08670 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VIMP08670 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
VIMP08670 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VIMP08670 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC18.15■□□□□ 0.5
VIMP08670 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
VIMP08670 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VIMP08670 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
VIMP08670 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC18.15■□□□□ 0.5
VIMP08670 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
VIMP08670 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
VIMP08670 DUSP5P2-201ENST00000426873 1033 ntBASIC18.15■□□□□ 0.5
VIMP08670 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC18.15■□□□□ 0.5
VIMP08670 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VIMP08670 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC18.15■□□□□ 0.5
VIMP08670 AC092437.1-201ENST00000624794 1048 ntBASIC18.15■□□□□ 0.5
VIMP08670 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
VIMP08670 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
VIMP08670 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC18.15■□□□□ 0.5
VIMP08670 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
VIMP08670 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VIMP08670 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VIMP08670 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
VIMP08670 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
VIMP08670 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VIMP08670 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
VIMP08670 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
VIMP08670 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
VIMP08670 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.5
VIMP08670 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
VIMP08670 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
VIMP08670 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
VIMP08670 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
VIMP08670 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VIMP08670 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
VIMP08670 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC18.14■□□□□ 0.49
VIMP08670 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VIMP08670 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VIMP08670 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms