Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AC019129.2-201ENST00000609837 1235 ntBASIC23.78■■□□□ 1.4
COL3A1P02461 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
COL3A1P02461 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC23.78■■□□□ 1.4
COL3A1P02461 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL3A1P02461 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL3A1P02461 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL3A1P02461 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
COL3A1P02461 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC23.77■■□□□ 1.4
COL3A1P02461 MRPL3P1-201ENST00000400109 1033 ntBASIC23.77■■□□□ 1.4
COL3A1P02461 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC23.77■■□□□ 1.4
COL3A1P02461 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC23.77■■□□□ 1.4
COL3A1P02461 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC23.77■■□□□ 1.4
COL3A1P02461 AL591684.3-201ENST00000605187 298 ntBASIC23.77■■□□□ 1.4
COL3A1P02461 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC23.77■■□□□ 1.4
COL3A1P02461 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC23.77■■□□□ 1.4
COL3A1P02461 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC23.77■■□□□ 1.4
COL3A1P02461 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC23.77■■□□□ 1.4
COL3A1P02461 KRT18P55-202ENST00000578578 1546 ntBASIC23.77■■□□□ 1.4
COL3A1P02461 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
COL3A1P02461 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
COL3A1P02461 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
COL3A1P02461 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC23.77■■□□□ 1.4
COL3A1P02461 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
COL3A1P02461 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
COL3A1P02461 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC23.77■■□□□ 1.4
COL3A1P02461 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
COL3A1P02461 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
COL3A1P02461 AC138028.4-201ENST00000564984 1845 ntBASIC23.76■■□□□ 1.39
COL3A1P02461 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC23.76■■□□□ 1.39
COL3A1P02461 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
COL3A1P02461 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC23.76■■□□□ 1.39
COL3A1P02461 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
COL3A1P02461 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
COL3A1P02461 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
COL3A1P02461 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC23.76■■□□□ 1.39
COL3A1P02461 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC23.76■■□□□ 1.39
COL3A1P02461 AC018712.1-201ENST00000455767 687 ntBASIC23.76■■□□□ 1.39
COL3A1P02461 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC23.76■■□□□ 1.39
COL3A1P02461 AC122714.2-201ENST00000502787 707 ntBASIC23.76■■□□□ 1.39
COL3A1P02461 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC23.76■■□□□ 1.39
COL3A1P02461 MIR7706-201ENST00000613747 67 ntBASIC23.76■■□□□ 1.39
COL3A1P02461 AL355877.3-201ENST00000622820 899 ntBASIC23.76■■□□□ 1.39
COL3A1P02461 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC23.76■■□□□ 1.39
COL3A1P02461 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC23.76■■□□□ 1.39
COL3A1P02461 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
COL3A1P02461 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
COL3A1P02461 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC23.76■■□□□ 1.39
COL3A1P02461 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
COL3A1P02461 AC022898.2-201ENST00000616822 1312 ntBASIC23.76■■□□□ 1.39
COL3A1P02461 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
COL3A1P02461 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC23.76■■□□□ 1.39
COL3A1P02461 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
COL3A1P02461 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC23.76■■□□□ 1.39
COL3A1P02461 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL3A1P02461 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC23.75■■□□□ 1.39
COL3A1P02461 DDX43P3-201ENST00000441064 443 ntBASIC23.75■■□□□ 1.39
COL3A1P02461 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC23.75■■□□□ 1.39
COL3A1P02461 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
COL3A1P02461 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC23.75■■□□□ 1.39
COL3A1P02461 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC23.75■■□□□ 1.39
COL3A1P02461 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL3A1P02461 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
COL3A1P02461 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
COL3A1P02461 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL3A1P02461 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL3A1P02461 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL3A1P02461 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC23.75■■□□□ 1.39
COL3A1P02461 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC23.75■■□□□ 1.39
COL3A1P02461 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC23.75■■□□□ 1.39
COL3A1P02461 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC23.75■■□□□ 1.39
COL3A1P02461 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC23.75■■□□□ 1.39
COL3A1P02461 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL3A1P02461 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
COL3A1P02461 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC23.75■■□□□ 1.39
COL3A1P02461 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL3A1P02461 FAM220CP-201ENST00000395253 831 ntBASIC23.75■■□□□ 1.39
COL3A1P02461 RBM17P3-201ENST00000417687 1192 ntBASIC23.75■■□□□ 1.39
COL3A1P02461 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL3A1P02461 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC23.75■■□□□ 1.39
COL3A1P02461 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
COL3A1P02461 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC23.75■■□□□ 1.39
COL3A1P02461 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL3A1P02461 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC23.75■■□□□ 1.39
COL3A1P02461 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
COL3A1P02461 COMP-202ENST00000425807 2292 ntTSL 2 BASIC23.74■■□□□ 1.39
COL3A1P02461 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC23.74■■□□□ 1.39
COL3A1P02461 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC23.74■■□□□ 1.39
COL3A1P02461 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC23.74■■□□□ 1.39
COL3A1P02461 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
COL3A1P02461 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC23.74■■□□□ 1.39
COL3A1P02461 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
COL3A1P02461 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
COL3A1P02461 ABCD1P5-201ENST00000445663 754 ntBASIC23.74■■□□□ 1.39
COL3A1P02461 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC23.74■■□□□ 1.39
COL3A1P02461 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
COL3A1P02461 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC23.74■■□□□ 1.39
COL3A1P02461 AL160237.2-201ENST00000556165 472 ntBASIC23.74■■□□□ 1.39
COL3A1P02461 AD001527.2-201ENST00000622994 785 ntBASIC23.74■■□□□ 1.39
COL3A1P02461 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
COL3A1P02461 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms