Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL2A1P02458 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
COL2A1P02458 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL2A1P02458 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.97■□□□□ 0.95
COL2A1P02458 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC20.97■□□□□ 0.95
COL2A1P02458 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL2A1P02458 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL2A1P02458 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
COL2A1P02458 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL2A1P02458 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL2A1P02458 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL2A1P02458 CENPM-204ENST00000402420 688 ntTSL 5 BASIC20.97■□□□□ 0.95
COL2A1P02458 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC20.97■□□□□ 0.95
COL2A1P02458 DDX43P3-201ENST00000441064 443 ntBASIC20.97■□□□□ 0.95
COL2A1P02458 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC20.97■□□□□ 0.95
COL2A1P02458 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC20.97■□□□□ 0.95
COL2A1P02458 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC20.97■□□□□ 0.95
COL2A1P02458 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC20.97■□□□□ 0.95
COL2A1P02458 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC20.97■□□□□ 0.95
COL2A1P02458 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC20.97■□□□□ 0.95
COL2A1P02458 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.97■□□□□ 0.95
COL2A1P02458 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
COL2A1P02458 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL2A1P02458 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL2A1P02458 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.97■□□□□ 0.95
COL2A1P02458 POR-209ENST00000439269 1858 ntTSL 2 BASIC20.97■□□□□ 0.95
COL2A1P02458 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
COL2A1P02458 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC20.97■□□□□ 0.95
COL2A1P02458 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL2A1P02458 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL2A1P02458 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC20.96■□□□□ 0.95
COL2A1P02458 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COL2A1P02458 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
COL2A1P02458 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC20.96■□□□□ 0.95
COL2A1P02458 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC20.96■□□□□ 0.95
COL2A1P02458 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL2A1P02458 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC20.96■□□□□ 0.95
COL2A1P02458 UNC93B6-202ENST00000528242 690 ntBASIC20.96■□□□□ 0.95
COL2A1P02458 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC20.96■□□□□ 0.95
COL2A1P02458 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC20.96■□□□□ 0.95
COL2A1P02458 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC20.96■□□□□ 0.95
COL2A1P02458 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL2A1P02458 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC20.96■□□□□ 0.95
COL2A1P02458 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
COL2A1P02458 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
COL2A1P02458 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC20.96■□□□□ 0.95
COL2A1P02458 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COL2A1P02458 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC20.96■□□□□ 0.95
COL2A1P02458 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.96■□□□□ 0.95
COL2A1P02458 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC20.96■□□□□ 0.95
COL2A1P02458 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COL2A1P02458 AL049757.1-201ENST00000616842 1596 ntBASIC20.96■□□□□ 0.95
COL2A1P02458 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL2A1P02458 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
COL2A1P02458 BX323043.1-201ENST00000641006 1765 ntBASIC20.96■□□□□ 0.95
COL2A1P02458 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL2A1P02458 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.95
COL2A1P02458 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL2A1P02458 KLF4P1-201ENST00000412782 1185 ntBASIC20.95■□□□□ 0.94
COL2A1P02458 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC20.95■□□□□ 0.94
COL2A1P02458 AC092183.1-201ENST00000469884 875 ntBASIC20.95■□□□□ 0.94
COL2A1P02458 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC20.95■□□□□ 0.94
COL2A1P02458 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL2A1P02458 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
COL2A1P02458 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL2A1P02458 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
COL2A1P02458 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC20.94■□□□□ 0.94
COL2A1P02458 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC20.94■□□□□ 0.94
COL2A1P02458 AC009947.1-201ENST00000444350 727 ntBASIC20.94■□□□□ 0.94
COL2A1P02458 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
COL2A1P02458 NMU-202ENST00000505262 693 ntTSL 3 BASIC20.94■□□□□ 0.94
COL2A1P02458 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC20.94■□□□□ 0.94
COL2A1P02458 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC20.94■□□□□ 0.94
COL2A1P02458 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC20.94■□□□□ 0.94
COL2A1P02458 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
COL2A1P02458 AL589182.2-201ENST00000619332 1049 ntBASIC20.94■□□□□ 0.94
COL2A1P02458 PGM5P2-202ENST00000637225 1043 ntBASIC20.94■□□□□ 0.94
COL2A1P02458 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC20.94■□□□□ 0.94
COL2A1P02458 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC20.94■□□□□ 0.94
COL2A1P02458 AC132938.5-201ENST00000624980 1813 ntBASIC20.94■□□□□ 0.94
COL2A1P02458 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL2A1P02458 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC20.94■□□□□ 0.94
COL2A1P02458 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL2A1P02458 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL2A1P02458 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL2A1P02458 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC20.94■□□□□ 0.94
COL2A1P02458 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL2A1P02458 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC20.94■□□□□ 0.94
COL2A1P02458 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC20.94■□□□□ 0.94
COL2A1P02458 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL2A1P02458 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL2A1P02458 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
COL2A1P02458 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL2A1P02458 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
COL2A1P02458 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC20.94■□□□□ 0.94
COL2A1P02458 AC003669.1-201ENST00000334569 611 ntBASIC20.94■□□□□ 0.94
COL2A1P02458 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
COL2A1P02458 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
COL2A1P02458 AL020989.1-201ENST00000422979 469 ntBASIC20.94■□□□□ 0.94
COL2A1P02458 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms