Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC21.64■■□□□ 1.06
COL1A1P02452 CTNS-203ENST00000399306 803 ntTSL 3 BASIC21.64■■□□□ 1.06
COL1A1P02452 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.06
COL1A1P02452 AC021087.4-201ENST00000563761 564 ntBASIC21.64■■□□□ 1.06
COL1A1P02452 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC21.64■■□□□ 1.06
COL1A1P02452 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC21.64■■□□□ 1.06
COL1A1P02452 CYGB-205ENST00000590175 830 ntTSL 3 BASIC21.64■■□□□ 1.06
COL1A1P02452 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC21.64■■□□□ 1.06
COL1A1P02452 AC025062.2-201ENST00000605477 670 ntBASIC21.64■■□□□ 1.06
COL1A1P02452 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC21.64■■□□□ 1.06
COL1A1P02452 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC21.64■■□□□ 1.06
COL1A1P02452 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.06
COL1A1P02452 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
COL1A1P02452 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
COL1A1P02452 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC21.64■■□□□ 1.06
COL1A1P02452 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC21.64■■□□□ 1.05
COL1A1P02452 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL1A1P02452 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
COL1A1P02452 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
COL1A1P02452 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
COL1A1P02452 AL138781.2-201ENST00000617896 1843 ntBASIC21.64■■□□□ 1.05
COL1A1P02452 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL1A1P02452 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC21.64■■□□□ 1.05
COL1A1P02452 RPS2P28-201ENST00000314255 741 ntBASIC21.64■■□□□ 1.05
COL1A1P02452 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL1A1P02452 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL1A1P02452 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC21.64■■□□□ 1.05
COL1A1P02452 PGAM5P1-201ENST00000518923 814 ntBASIC21.64■■□□□ 1.05
COL1A1P02452 IGHV3-22-201ENST00000520721 359 ntBASIC21.64■■□□□ 1.05
COL1A1P02452 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL1A1P02452 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
COL1A1P02452 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL1A1P02452 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL1A1P02452 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL1A1P02452 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL1A1P02452 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
COL1A1P02452 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC21.63■■□□□ 1.05
COL1A1P02452 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL1A1P02452 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC21.63■■□□□ 1.05
COL1A1P02452 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC21.63■■□□□ 1.05
COL1A1P02452 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
COL1A1P02452 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
COL1A1P02452 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL1A1P02452 DUTP2-201ENST00000519164 463 ntBASIC21.63■■□□□ 1.05
COL1A1P02452 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC21.63■■□□□ 1.05
COL1A1P02452 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
COL1A1P02452 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC21.63■■□□□ 1.05
COL1A1P02452 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC21.63■■□□□ 1.05
COL1A1P02452 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
COL1A1P02452 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
COL1A1P02452 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
COL1A1P02452 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC21.62■■□□□ 1.05
COL1A1P02452 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
COL1A1P02452 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
COL1A1P02452 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
COL1A1P02452 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
COL1A1P02452 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL1A1P02452 FLYWCH1P1-201ENST00000460917 1874 ntBASIC21.62■■□□□ 1.05
COL1A1P02452 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
COL1A1P02452 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
COL1A1P02452 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC21.62■■□□□ 1.05
COL1A1P02452 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL1A1P02452 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC21.62■■□□□ 1.05
COL1A1P02452 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL1A1P02452 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL1A1P02452 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL1A1P02452 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL1A1P02452 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
COL1A1P02452 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC21.62■■□□□ 1.05
COL1A1P02452 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL1A1P02452 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL1A1P02452 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL1A1P02452 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL1A1P02452 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC21.61■■□□□ 1.05
COL1A1P02452 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL1A1P02452 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC21.61■■□□□ 1.05
COL1A1P02452 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
COL1A1P02452 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
COL1A1P02452 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL1A1P02452 CD63-204ENST00000546939 779 ntTSL 3 BASIC21.61■■□□□ 1.05
COL1A1P02452 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC21.61■■□□□ 1.05
COL1A1P02452 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC21.61■■□□□ 1.05
COL1A1P02452 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC21.61■■□□□ 1.05
COL1A1P02452 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
COL1A1P02452 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC21.61■■□□□ 1.05
COL1A1P02452 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL1A1P02452 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC21.61■■□□□ 1.05
COL1A1P02452 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL1A1P02452 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL1A1P02452 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL1A1P02452 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL1A1P02452 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
COL1A1P02452 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
COL1A1P02452 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL1A1P02452 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
COL1A1P02452 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL1A1P02452 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
COL1A1P02452 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC21.6■■□□□ 1.05
COL1A1P02452 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL1A1P02452 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC21.6■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms