Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TNFP01375 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TNFP01375 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TNFP01375 PHGDH-209ENST00000641074 1780 ntBASIC17.6■□□□□ 0.41
TNFP01375 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.6■□□□□ 0.41
TNFP01375 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC17.6■□□□□ 0.41
TNFP01375 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TNFP01375 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
TNFP01375 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TNFP01375 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
TNFP01375 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
TNFP01375 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC17.59■□□□□ 0.41
TNFP01375 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TNFP01375 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TNFP01375 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TNFP01375 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TNFP01375 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC17.59■□□□□ 0.41
TNFP01375 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
TNFP01375 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TNFP01375 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TNFP01375 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TNFP01375 TBC1D3P5-201ENST00000579401 1545 ntBASIC17.59■□□□□ 0.41
TNFP01375 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TNFP01375 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.59■□□□□ 0.41
TNFP01375 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
TNFP01375 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
TNFP01375 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC17.59■□□□□ 0.41
TNFP01375 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC17.59■□□□□ 0.41
TNFP01375 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC17.59■□□□□ 0.41
TNFP01375 AC079776.4-201ENST00000511039 504 ntBASIC17.59■□□□□ 0.41
TNFP01375 AC106795.1-205ENST00000512851 1056 ntBASIC17.59■□□□□ 0.41
TNFP01375 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC17.59■□□□□ 0.41
TNFP01375 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC17.59■□□□□ 0.41
TNFP01375 SLC25A6P4-201ENST00000586535 553 ntBASIC17.59■□□□□ 0.41
TNFP01375 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC17.59■□□□□ 0.41
TNFP01375 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TNFP01375 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC17.59■□□□□ 0.41
TNFP01375 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.59■□□□□ 0.41
TNFP01375 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC17.59■□□□□ 0.41
TNFP01375 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
TNFP01375 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
TNFP01375 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.59■□□□□ 0.41
TNFP01375 AC018445.3-201ENST00000624177 1945 ntBASIC17.59■□□□□ 0.41
TNFP01375 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC17.58■□□□□ 0.41
TNFP01375 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TNFP01375 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TNFP01375 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.41
TNFP01375 AC093010.1-201ENST00000473625 1624 ntBASIC17.58■□□□□ 0.41
TNFP01375 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC17.58■□□□□ 0.41
TNFP01375 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.58■□□□□ 0.41
TNFP01375 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TNFP01375 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
TNFP01375 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
TNFP01375 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
TNFP01375 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TNFP01375 MED16-201ENST00000269814 1199 ntTSL 5 BASIC17.58■□□□□ 0.4
TNFP01375 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TNFP01375 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TNFP01375 FUOM-202ENST00000368551 628 ntTSL 3 BASIC17.58■□□□□ 0.4
TNFP01375 MRPL3P1-201ENST00000400109 1033 ntBASIC17.58■□□□□ 0.4
TNFP01375 FAM197Y8-203ENST00000450145 560 ntBASIC17.58■□□□□ 0.4
TNFP01375 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC17.58■□□□□ 0.4
TNFP01375 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC17.58■□□□□ 0.4
TNFP01375 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC17.58■□□□□ 0.4
TNFP01375 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
TNFP01375 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TNFP01375 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
TNFP01375 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TNFP01375 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
TNFP01375 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
TNFP01375 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.58■□□□□ 0.4
TNFP01375 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TNFP01375 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TNFP01375 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TNFP01375 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
TNFP01375 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TNFP01375 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC17.57■□□□□ 0.4
TNFP01375 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TNFP01375 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC17.57■□□□□ 0.4
TNFP01375 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.57■□□□□ 0.4
TNFP01375 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
TNFP01375 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TNFP01375 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TNFP01375 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC17.57■□□□□ 0.4
TNFP01375 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TNFP01375 AC097374.2-201ENST00000618617 1306 ntBASIC17.57■□□□□ 0.4
TNFP01375 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
TNFP01375 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.57■□□□□ 0.4
TNFP01375 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TNFP01375 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TNFP01375 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TNFP01375 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TNFP01375 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TNFP01375 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
TNFP01375 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TNFP01375 MTDHP3-201ENST00000594186 672 ntBASIC17.57■□□□□ 0.4
TNFP01375 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
TNFP01375 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC17.57■□□□□ 0.4
TNFP01375 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TNFP01375 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms