Protein–RNA interactions for Protein: O75400

PRPF40A, Pre-mRNA-processing factor 40 homolog A, humanhuman

Known RBP Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40AO75400 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PRPF40AO75400 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC21.05■□□□□ 0.96
PRPF40AO75400 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC21.05■□□□□ 0.96
PRPF40AO75400 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC21.05■□□□□ 0.96
PRPF40AO75400 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PRPF40AO75400 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
PRPF40AO75400 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC21.05■□□□□ 0.96
PRPF40AO75400 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC21.05■□□□□ 0.96
PRPF40AO75400 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PRPF40AO75400 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
PRPF40AO75400 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
PRPF40AO75400 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC21.05■□□□□ 0.96
PRPF40AO75400 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
PRPF40AO75400 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC21.05■□□□□ 0.96
PRPF40AO75400 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC21.05■□□□□ 0.96
PRPF40AO75400 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PRPF40AO75400 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC21.04■□□□□ 0.96
PRPF40AO75400 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
PRPF40AO75400 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PRPF40AO75400 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
PRPF40AO75400 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PRPF40AO75400 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PRPF40AO75400 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PRPF40AO75400 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PRPF40AO75400 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PRPF40AO75400 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PRPF40AO75400 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
PRPF40AO75400 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC21.04■□□□□ 0.96
PRPF40AO75400 AL023284.2-201ENST00000405850 579 ntBASIC21.04■□□□□ 0.96
PRPF40AO75400 AP002982.1-201ENST00000492365 877 ntBASIC21.04■□□□□ 0.96
PRPF40AO75400 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC21.04■□□□□ 0.96
PRPF40AO75400 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC21.04■□□□□ 0.96
PRPF40AO75400 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC21.04■□□□□ 0.96
PRPF40AO75400 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
PRPF40AO75400 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PRPF40AO75400 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PRPF40AO75400 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
PRPF40AO75400 AL355312.1-201ENST00000407115 2176 ntBASIC21.04■□□□□ 0.96
PRPF40AO75400 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PRPF40AO75400 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PRPF40AO75400 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PRPF40AO75400 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PRPF40AO75400 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
PRPF40AO75400 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PRPF40AO75400 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PRPF40AO75400 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC21.04■□□□□ 0.96
PRPF40AO75400 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
PRPF40AO75400 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PRPF40AO75400 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC21.03■□□□□ 0.96
PRPF40AO75400 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PRPF40AO75400 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PRPF40AO75400 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC21.03■□□□□ 0.96
PRPF40AO75400 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PRPF40AO75400 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC21.03■□□□□ 0.96
PRPF40AO75400 UROS-202ENST00000368778 1556 ntTSL 2 BASIC21.03■□□□□ 0.96
PRPF40AO75400 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PRPF40AO75400 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
PRPF40AO75400 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PRPF40AO75400 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC21.03■□□□□ 0.96
PRPF40AO75400 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC21.03■□□□□ 0.96
PRPF40AO75400 AP001412.1-201ENST00000608405 714 ntBASIC21.03■□□□□ 0.96
PRPF40AO75400 AC130371.2-201ENST00000619443 611 ntBASIC21.03■□□□□ 0.96
PRPF40AO75400 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PRPF40AO75400 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
PRPF40AO75400 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
PRPF40AO75400 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
PRPF40AO75400 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PRPF40AO75400 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PRPF40AO75400 AC034236.2-201ENST00000606662 1610 ntBASIC21.03■□□□□ 0.96
PRPF40AO75400 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
PRPF40AO75400 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
PRPF40AO75400 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC21.03■□□□□ 0.96
PRPF40AO75400 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
PRPF40AO75400 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
PRPF40AO75400 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PRPF40AO75400 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
PRPF40AO75400 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC21.02■□□□□ 0.96
PRPF40AO75400 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
PRPF40AO75400 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
PRPF40AO75400 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PRPF40AO75400 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
PRPF40AO75400 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PRPF40AO75400 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC21.02■□□□□ 0.96
PRPF40AO75400 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PRPF40AO75400 RPS2P55-201ENST00000397318 883 ntBASIC21.02■□□□□ 0.96
PRPF40AO75400 ELP6-205ENST00000439305 880 ntTSL 2 BASIC21.02■□□□□ 0.96
PRPF40AO75400 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
PRPF40AO75400 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC21.02■□□□□ 0.96
PRPF40AO75400 AC107956.1-201ENST00000494359 873 ntBASIC21.02■□□□□ 0.96
PRPF40AO75400 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
PRPF40AO75400 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC21.02■□□□□ 0.96
PRPF40AO75400 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
PRPF40AO75400 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC21.02■□□□□ 0.96
PRPF40AO75400 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
PRPF40AO75400 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC21.02■□□□□ 0.96
PRPF40AO75400 AF186192.3-201ENST00000583427 947 ntBASIC21.02■□□□□ 0.96
PRPF40AO75400 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
PRPF40AO75400 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
PRPF40AO75400 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PRPF40AO75400 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms