Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CACNA1FO60840 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC22.65■■□□□ 1.22
CACNA1FO60840 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC22.65■■□□□ 1.22
CACNA1FO60840 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC22.65■■□□□ 1.22
CACNA1FO60840 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC22.65■■□□□ 1.22
CACNA1FO60840 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC22.65■■□□□ 1.22
CACNA1FO60840 TP73-AS1-207ENST00000624167 988 ntBASIC22.65■■□□□ 1.22
CACNA1FO60840 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
CACNA1FO60840 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC22.64■■□□□ 1.22
CACNA1FO60840 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
CACNA1FO60840 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC22.64■■□□□ 1.22
CACNA1FO60840 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC22.64■■□□□ 1.22
CACNA1FO60840 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC22.64■■□□□ 1.22
CACNA1FO60840 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.22
CACNA1FO60840 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
CACNA1FO60840 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
CACNA1FO60840 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.21
CACNA1FO60840 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC22.64■■□□□ 1.21
CACNA1FO60840 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.21
CACNA1FO60840 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.21
CACNA1FO60840 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.21
CACNA1FO60840 NEFHP1-201ENST00000412845 2629 ntBASIC22.64■■□□□ 1.21
CACNA1FO60840 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
CACNA1FO60840 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
CACNA1FO60840 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
CACNA1FO60840 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
CACNA1FO60840 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC22.63■■□□□ 1.21
CACNA1FO60840 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC22.63■■□□□ 1.21
CACNA1FO60840 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC22.63■■□□□ 1.21
CACNA1FO60840 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC22.63■■□□□ 1.21
CACNA1FO60840 SLC25A6P4-201ENST00000586535 553 ntBASIC22.63■■□□□ 1.21
CACNA1FO60840 AC116407.2-201ENST00000613639 860 ntBASIC22.63■■□□□ 1.21
CACNA1FO60840 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC22.63■■□□□ 1.21
CACNA1FO60840 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
CACNA1FO60840 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC22.63■■□□□ 1.21
CACNA1FO60840 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
CACNA1FO60840 AL353593.2-201ENST00000602529 1483 ntBASIC22.63■■□□□ 1.21
CACNA1FO60840 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC22.63■■□□□ 1.21
CACNA1FO60840 AC004870.1-201ENST00000315132 882 ntBASIC22.63■■□□□ 1.21
CACNA1FO60840 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC22.63■■□□□ 1.21
CACNA1FO60840 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC22.63■■□□□ 1.21
CACNA1FO60840 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC22.63■■□□□ 1.21
CACNA1FO60840 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC22.63■■□□□ 1.21
CACNA1FO60840 TBCB-205ENST00000585746 875 ntTSL 3 BASIC22.63■■□□□ 1.21
CACNA1FO60840 IRF5-214ENST00000613821 595 ntTSL 5 BASIC22.63■■□□□ 1.21
CACNA1FO60840 AC079776.2-201ENST00000641154 1609 ntBASIC22.63■■□□□ 1.21
CACNA1FO60840 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
CACNA1FO60840 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC22.62■■□□□ 1.21
CACNA1FO60840 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC22.62■■□□□ 1.21
CACNA1FO60840 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
CACNA1FO60840 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC22.62■■□□□ 1.21
CACNA1FO60840 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CACNA1FO60840 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CACNA1FO60840 AC103564.2-201ENST00000432853 1299 ntBASIC22.62■■□□□ 1.21
CACNA1FO60840 AF238378.1-201ENST00000526806 358 ntBASIC22.62■■□□□ 1.21
CACNA1FO60840 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC22.62■■□□□ 1.21
CACNA1FO60840 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC22.62■■□□□ 1.21
CACNA1FO60840 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC22.62■■□□□ 1.21
CACNA1FO60840 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC22.62■■□□□ 1.21
CACNA1FO60840 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC22.62■■□□□ 1.21
CACNA1FO60840 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
CACNA1FO60840 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC22.62■■□□□ 1.21
CACNA1FO60840 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
CACNA1FO60840 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC22.62■■□□□ 1.21
CACNA1FO60840 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC22.62■■□□□ 1.21
CACNA1FO60840 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CACNA1FO60840 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
CACNA1FO60840 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC22.62■■□□□ 1.21
CACNA1FO60840 AL390961.4-201ENST00000623958 2535 ntBASIC22.62■■□□□ 1.21
CACNA1FO60840 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC22.62■■□□□ 1.21
CACNA1FO60840 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CACNA1FO60840 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
CACNA1FO60840 AL121772.3-201ENST00000610840 674 ntBASIC22.61■■□□□ 1.21
CACNA1FO60840 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
CACNA1FO60840 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
CACNA1FO60840 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
CACNA1FO60840 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
CACNA1FO60840 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC22.61■■□□□ 1.21
CACNA1FO60840 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
CACNA1FO60840 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
CACNA1FO60840 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC22.61■■□□□ 1.21
CACNA1FO60840 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC22.61■■□□□ 1.21
CACNA1FO60840 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
CACNA1FO60840 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC22.61■■□□□ 1.21
CACNA1FO60840 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
CACNA1FO60840 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC22.61■■□□□ 1.21
CACNA1FO60840 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC22.61■■□□□ 1.21
CACNA1FO60840 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC22.61■■□□□ 1.21
CACNA1FO60840 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC22.61■■□□□ 1.21
CACNA1FO60840 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC22.61■■□□□ 1.21
CACNA1FO60840 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
CACNA1FO60840 AL139288.1-201ENST00000623748 933 ntBASIC22.61■■□□□ 1.21
CACNA1FO60840 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC22.61■■□□□ 1.21
CACNA1FO60840 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC22.61■■□□□ 1.21
CACNA1FO60840 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
CACNA1FO60840 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
CACNA1FO60840 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
CACNA1FO60840 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
CACNA1FO60840 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
CACNA1FO60840 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 88.8 ms