Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
CDX4O14627 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC17.33■□□□□ 0.36
CDX4O14627 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CDX4O14627 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.33■□□□□ 0.36
CDX4O14627 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CDX4O14627 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
CDX4O14627 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDX4O14627 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDX4O14627 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDX4O14627 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC17.32■□□□□ 0.36
CDX4O14627 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDX4O14627 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC17.32■□□□□ 0.36
CDX4O14627 USP48-205ENST00000421625 2818 ntTSL 2 BASIC17.32■□□□□ 0.36
CDX4O14627 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CDX4O14627 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CDX4O14627 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDX4O14627 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.32■□□□□ 0.36
CDX4O14627 TSEN15P1-201ENST00000423257 515 ntBASIC17.32■□□□□ 0.36
CDX4O14627 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC17.32■□□□□ 0.36
CDX4O14627 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDX4O14627 CCND1-203ENST00000536559 553 ntTSL 3 BASIC17.32■□□□□ 0.36
CDX4O14627 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CDX4O14627 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC17.32■□□□□ 0.36
CDX4O14627 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC17.32■□□□□ 0.36
CDX4O14627 AC004790.2-201ENST00000623588 572 ntBASIC17.32■□□□□ 0.36
CDX4O14627 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDX4O14627 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDX4O14627 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CDX4O14627 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC17.32■□□□□ 0.36
CDX4O14627 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDX4O14627 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC17.32■□□□□ 0.36
CDX4O14627 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDX4O14627 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
CDX4O14627 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CDX4O14627 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDX4O14627 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDX4O14627 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDX4O14627 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDX4O14627 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.32■□□□□ 0.36
CDX4O14627 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC17.32■□□□□ 0.36
CDX4O14627 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDX4O14627 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC17.31■□□□□ 0.36
CDX4O14627 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDX4O14627 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDX4O14627 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDX4O14627 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CDX4O14627 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
CDX4O14627 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
CDX4O14627 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CDX4O14627 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDX4O14627 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC17.31■□□□□ 0.36
CDX4O14627 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC17.31■□□□□ 0.36
CDX4O14627 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CDX4O14627 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC17.31■□□□□ 0.36
CDX4O14627 RNF34-208ENST00000555076 593 ntTSL 3 BASIC17.31■□□□□ 0.36
CDX4O14627 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC17.31■□□□□ 0.36
CDX4O14627 AC008667.4-201ENST00000607370 168 ntBASIC17.31■□□□□ 0.36
CDX4O14627 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDX4O14627 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDX4O14627 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
CDX4O14627 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDX4O14627 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDX4O14627 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDX4O14627 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDX4O14627 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
CDX4O14627 AL499627.1-201ENST00000569373 2188 ntBASIC17.3■□□□□ 0.36
CDX4O14627 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDX4O14627 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC17.3■□□□□ 0.36
CDX4O14627 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDX4O14627 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDX4O14627 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC17.3■□□□□ 0.36
CDX4O14627 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDX4O14627 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC17.3■□□□□ 0.36
CDX4O14627 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDX4O14627 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC17.3■□□□□ 0.36
CDX4O14627 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CDX4O14627 ATP6V0CP3-201ENST00000417255 467 ntBASIC17.3■□□□□ 0.36
CDX4O14627 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC17.3■□□□□ 0.36
CDX4O14627 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC17.3■□□□□ 0.36
CDX4O14627 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC17.3■□□□□ 0.36
CDX4O14627 CYB561-217ENST00000582997 877 ntTSL 5 BASIC17.3■□□□□ 0.36
CDX4O14627 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC17.3■□□□□ 0.36
CDX4O14627 AC073592.5-201ENST00000624854 528 ntBASIC17.3■□□□□ 0.36
CDX4O14627 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
CDX4O14627 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
CDX4O14627 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CDX4O14627 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC17.3■□□□□ 0.36
CDX4O14627 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDX4O14627 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDX4O14627 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDX4O14627 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC17.29■□□□□ 0.36
CDX4O14627 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDX4O14627 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
CDX4O14627 PTMS-202ENST00000389462 773 ntTSL 2 BASIC17.29■□□□□ 0.36
CDX4O14627 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDX4O14627 IGLL3P-201ENST00000412472 434 ntBASIC17.29■□□□□ 0.36
CDX4O14627 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC17.29■□□□□ 0.36
CDX4O14627 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
CDX4O14627 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC17.29■□□□□ 0.36
CDX4O14627 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms