Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
USP3Q9Y6I4 ABR-217ENST00000572441 563 ntTSL 4 BASIC18.88■□□□□ 0.61
USP3Q9Y6I4 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
USP3Q9Y6I4 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC18.88■□□□□ 0.61
USP3Q9Y6I4 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP3Q9Y6I4 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
USP3Q9Y6I4 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC18.88■□□□□ 0.61
USP3Q9Y6I4 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
USP3Q9Y6I4 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
USP3Q9Y6I4 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC18.88■□□□□ 0.61
USP3Q9Y6I4 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP3Q9Y6I4 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP3Q9Y6I4 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC18.88■□□□□ 0.61
USP3Q9Y6I4 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP3Q9Y6I4 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC18.88■□□□□ 0.61
USP3Q9Y6I4 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP3Q9Y6I4 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC18.87■□□□□ 0.61
USP3Q9Y6I4 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.87■□□□□ 0.61
USP3Q9Y6I4 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
USP3Q9Y6I4 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP3Q9Y6I4 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP3Q9Y6I4 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP3Q9Y6I4 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP3Q9Y6I4 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP3Q9Y6I4 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
USP3Q9Y6I4 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
USP3Q9Y6I4 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
USP3Q9Y6I4 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
USP3Q9Y6I4 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP3Q9Y6I4 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.87■□□□□ 0.61
USP3Q9Y6I4 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP3Q9Y6I4 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC18.87■□□□□ 0.61
USP3Q9Y6I4 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC18.87■□□□□ 0.61
USP3Q9Y6I4 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
USP3Q9Y6I4 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC18.87■□□□□ 0.61
USP3Q9Y6I4 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP3Q9Y6I4 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
USP3Q9Y6I4 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC18.87■□□□□ 0.61
USP3Q9Y6I4 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC18.87■□□□□ 0.61
USP3Q9Y6I4 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
USP3Q9Y6I4 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC18.87■□□□□ 0.61
USP3Q9Y6I4 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
USP3Q9Y6I4 AC005336.2-201ENST00000593183 939 ntBASIC18.87■□□□□ 0.61
USP3Q9Y6I4 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC18.87■□□□□ 0.61
USP3Q9Y6I4 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
USP3Q9Y6I4 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC18.87■□□□□ 0.61
USP3Q9Y6I4 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP3Q9Y6I4 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP3Q9Y6I4 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
USP3Q9Y6I4 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.87■□□□□ 0.61
USP3Q9Y6I4 REXO1L9P-201ENST00000604264 2108 ntBASIC18.86■□□□□ 0.61
USP3Q9Y6I4 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC18.86■□□□□ 0.61
USP3Q9Y6I4 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
USP3Q9Y6I4 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
USP3Q9Y6I4 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP3Q9Y6I4 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP3Q9Y6I4 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
USP3Q9Y6I4 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP3Q9Y6I4 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC18.86■□□□□ 0.61
USP3Q9Y6I4 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
USP3Q9Y6I4 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP3Q9Y6I4 IPPK-202ENST00000375522 882 ntTSL 3 BASIC18.86■□□□□ 0.61
USP3Q9Y6I4 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
USP3Q9Y6I4 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
USP3Q9Y6I4 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
USP3Q9Y6I4 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC18.86■□□□□ 0.61
USP3Q9Y6I4 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
USP3Q9Y6I4 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
USP3Q9Y6I4 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC18.86■□□□□ 0.61
USP3Q9Y6I4 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC18.86■□□□□ 0.61
USP3Q9Y6I4 AC104819.1-201ENST00000504587 486 ntBASIC18.86■□□□□ 0.61
USP3Q9Y6I4 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC18.86■□□□□ 0.61
USP3Q9Y6I4 AC074051.2-201ENST00000565115 352 ntBASIC18.86■□□□□ 0.61
USP3Q9Y6I4 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC18.86■□□□□ 0.61
USP3Q9Y6I4 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC18.86■□□□□ 0.61
USP3Q9Y6I4 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP3Q9Y6I4 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC18.86■□□□□ 0.61
USP3Q9Y6I4 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
USP3Q9Y6I4 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
USP3Q9Y6I4 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP3Q9Y6I4 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC18.86■□□□□ 0.61
USP3Q9Y6I4 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
USP3Q9Y6I4 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP3Q9Y6I4 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC18.86■□□□□ 0.61
USP3Q9Y6I4 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
USP3Q9Y6I4 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP3Q9Y6I4 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
USP3Q9Y6I4 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC18.86■□□□□ 0.61
USP3Q9Y6I4 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USP3Q9Y6I4 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USP3Q9Y6I4 NSUN5P1-202ENST00000421140 1535 ntBASIC18.85■□□□□ 0.61
USP3Q9Y6I4 NSUN5P2-203ENST00000457352 1529 ntBASIC18.85■□□□□ 0.61
USP3Q9Y6I4 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
USP3Q9Y6I4 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
USP3Q9Y6I4 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC18.85■□□□□ 0.61
USP3Q9Y6I4 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC18.85■□□□□ 0.61
USP3Q9Y6I4 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC18.85■□□□□ 0.61
USP3Q9Y6I4 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
USP3Q9Y6I4 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USP3Q9Y6I4 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms