Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM56Q9BRZ2 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM56Q9BRZ2 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC18.49■□□□□ 0.55
TRIM56Q9BRZ2 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC18.49■□□□□ 0.55
TRIM56Q9BRZ2 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC18.49■□□□□ 0.55
TRIM56Q9BRZ2 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC18.49■□□□□ 0.55
TRIM56Q9BRZ2 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM56Q9BRZ2 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM56Q9BRZ2 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM56Q9BRZ2 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM56Q9BRZ2 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC18.48■□□□□ 0.55
TRIM56Q9BRZ2 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM56Q9BRZ2 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM56Q9BRZ2 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM56Q9BRZ2 AC009102.3-201ENST00000623118 1491 ntBASIC18.48■□□□□ 0.55
TRIM56Q9BRZ2 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM56Q9BRZ2 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM56Q9BRZ2 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM56Q9BRZ2 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM56Q9BRZ2 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM56Q9BRZ2 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM56Q9BRZ2 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM56Q9BRZ2 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC18.48■□□□□ 0.55
TRIM56Q9BRZ2 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC18.48■□□□□ 0.55
TRIM56Q9BRZ2 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM56Q9BRZ2 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM56Q9BRZ2 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM56Q9BRZ2 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM56Q9BRZ2 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM56Q9BRZ2 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC18.48■□□□□ 0.55
TRIM56Q9BRZ2 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
TRIM56Q9BRZ2 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC18.48■□□□□ 0.55
TRIM56Q9BRZ2 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM56Q9BRZ2 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM56Q9BRZ2 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
TRIM56Q9BRZ2 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM56Q9BRZ2 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM56Q9BRZ2 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC18.47■□□□□ 0.55
TRIM56Q9BRZ2 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM56Q9BRZ2 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM56Q9BRZ2 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC18.47■□□□□ 0.55
TRIM56Q9BRZ2 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM56Q9BRZ2 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM56Q9BRZ2 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
TRIM56Q9BRZ2 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC18.47■□□□□ 0.55
TRIM56Q9BRZ2 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC18.47■□□□□ 0.55
TRIM56Q9BRZ2 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM56Q9BRZ2 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC18.47■□□□□ 0.55
TRIM56Q9BRZ2 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC18.47■□□□□ 0.55
TRIM56Q9BRZ2 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM56Q9BRZ2 SNX21-213ENST00000614929 587 ntTSL 5 BASIC18.47■□□□□ 0.55
TRIM56Q9BRZ2 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC18.47■□□□□ 0.55
TRIM56Q9BRZ2 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC18.47■□□□□ 0.55
TRIM56Q9BRZ2 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM56Q9BRZ2 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM56Q9BRZ2 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
TRIM56Q9BRZ2 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM56Q9BRZ2 HOXB1-202ENST00000577092 1414 ntBASIC18.47■□□□□ 0.55
TRIM56Q9BRZ2 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC18.47■□□□□ 0.55
TRIM56Q9BRZ2 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM56Q9BRZ2 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
TRIM56Q9BRZ2 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM56Q9BRZ2 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
TRIM56Q9BRZ2 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
TRIM56Q9BRZ2 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC18.46■□□□□ 0.55
TRIM56Q9BRZ2 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM56Q9BRZ2 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
TRIM56Q9BRZ2 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM56Q9BRZ2 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM56Q9BRZ2 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM56Q9BRZ2 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM56Q9BRZ2 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC18.46■□□□□ 0.55
TRIM56Q9BRZ2 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC18.46■□□□□ 0.55
TRIM56Q9BRZ2 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM56Q9BRZ2 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC18.46■□□□□ 0.55
TRIM56Q9BRZ2 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC18.46■□□□□ 0.55
TRIM56Q9BRZ2 TSPY17P-201ENST00000450329 467 ntBASIC18.46■□□□□ 0.55
TRIM56Q9BRZ2 WWOX-216ENST00000569818 525 ntBASIC18.46■□□□□ 0.55
TRIM56Q9BRZ2 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.55
TRIM56Q9BRZ2 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC18.46■□□□□ 0.55
TRIM56Q9BRZ2 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM56Q9BRZ2 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
TRIM56Q9BRZ2 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM56Q9BRZ2 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM56Q9BRZ2 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM56Q9BRZ2 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM56Q9BRZ2 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM56Q9BRZ2 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM56Q9BRZ2 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM56Q9BRZ2 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
TRIM56Q9BRZ2 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM56Q9BRZ2 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM56Q9BRZ2 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM56Q9BRZ2 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM56Q9BRZ2 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM56Q9BRZ2 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM56Q9BRZ2 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM56Q9BRZ2 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM56Q9BRZ2 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM56Q9BRZ2 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms