Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PTCHD1Q96NR3 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC17.06■□□□□ 0.32
PTCHD1Q96NR3 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PTCHD1Q96NR3 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC17.06■□□□□ 0.32
PTCHD1Q96NR3 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PTCHD1Q96NR3 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC17.06■□□□□ 0.32
PTCHD1Q96NR3 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC17.06■□□□□ 0.32
PTCHD1Q96NR3 TSSC2-201ENST00000450217 709 ntBASIC17.06■□□□□ 0.32
PTCHD1Q96NR3 AC113404.2-201ENST00000507884 177 ntBASIC17.06■□□□□ 0.32
PTCHD1Q96NR3 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PTCHD1Q96NR3 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC17.06■□□□□ 0.32
PTCHD1Q96NR3 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC17.06■□□□□ 0.32
PTCHD1Q96NR3 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
PTCHD1Q96NR3 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
PTCHD1Q96NR3 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
PTCHD1Q96NR3 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC17.06■□□□□ 0.32
PTCHD1Q96NR3 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PTCHD1Q96NR3 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC17.06■□□□□ 0.32
PTCHD1Q96NR3 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PTCHD1Q96NR3 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
PTCHD1Q96NR3 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PTCHD1Q96NR3 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PTCHD1Q96NR3 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
PTCHD1Q96NR3 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PTCHD1Q96NR3 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PTCHD1Q96NR3 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC17.06■□□□□ 0.32
PTCHD1Q96NR3 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
PTCHD1Q96NR3 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
PTCHD1Q96NR3 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTCHD1Q96NR3 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC17.05■□□□□ 0.32
PTCHD1Q96NR3 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTCHD1Q96NR3 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTCHD1Q96NR3 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PTCHD1Q96NR3 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PTCHD1Q96NR3 AC135050.7-201ENST00000624508 2218 ntBASIC17.05■□□□□ 0.32
PTCHD1Q96NR3 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
PTCHD1Q96NR3 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTCHD1Q96NR3 NARF-204ENST00000390006 1766 ntTSL 2 BASIC17.05■□□□□ 0.32
PTCHD1Q96NR3 EFTUD1P1-204ENST00000560401 1798 ntBASIC17.05■□□□□ 0.32
PTCHD1Q96NR3 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTCHD1Q96NR3 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC17.05■□□□□ 0.32
PTCHD1Q96NR3 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTCHD1Q96NR3 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTCHD1Q96NR3 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTCHD1Q96NR3 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
PTCHD1Q96NR3 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC17.05■□□□□ 0.32
PTCHD1Q96NR3 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTCHD1Q96NR3 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
PTCHD1Q96NR3 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC17.05■□□□□ 0.32
PTCHD1Q96NR3 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PTCHD1Q96NR3 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PTCHD1Q96NR3 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PTCHD1Q96NR3 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC17.05■□□□□ 0.32
PTCHD1Q96NR3 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC17.05■□□□□ 0.32
PTCHD1Q96NR3 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC17.05■□□□□ 0.32
PTCHD1Q96NR3 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC17.05■□□□□ 0.32
PTCHD1Q96NR3 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC17.05■□□□□ 0.32
PTCHD1Q96NR3 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC17.05■□□□□ 0.32
PTCHD1Q96NR3 BCL10-202ENST00000620248 774 ntTSL 5 BASIC17.05■□□□□ 0.32
PTCHD1Q96NR3 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTCHD1Q96NR3 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PTCHD1Q96NR3 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC17.05■□□□□ 0.32
PTCHD1Q96NR3 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC17.05■□□□□ 0.32
PTCHD1Q96NR3 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
PTCHD1Q96NR3 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTCHD1Q96NR3 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
PTCHD1Q96NR3 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTCHD1Q96NR3 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTCHD1Q96NR3 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.05■□□□□ 0.32
PTCHD1Q96NR3 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTCHD1Q96NR3 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PTCHD1Q96NR3 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
PTCHD1Q96NR3 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTCHD1Q96NR3 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
PTCHD1Q96NR3 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
PTCHD1Q96NR3 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTCHD1Q96NR3 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTCHD1Q96NR3 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
PTCHD1Q96NR3 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTCHD1Q96NR3 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTCHD1Q96NR3 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PTCHD1Q96NR3 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTCHD1Q96NR3 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
PTCHD1Q96NR3 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.04■□□□□ 0.32
PTCHD1Q96NR3 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTCHD1Q96NR3 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTCHD1Q96NR3 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTCHD1Q96NR3 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC17.04■□□□□ 0.32
PTCHD1Q96NR3 IGHV3-41-201ENST00000613121 348 ntBASIC17.04■□□□□ 0.32
PTCHD1Q96NR3 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTCHD1Q96NR3 VPS72-207ENST00000640458 689 ntTSL 5 BASIC17.04■□□□□ 0.32
PTCHD1Q96NR3 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTCHD1Q96NR3 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
PTCHD1Q96NR3 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTCHD1Q96NR3 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTCHD1Q96NR3 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTCHD1Q96NR3 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PTCHD1Q96NR3 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC17.04■□□□□ 0.32
PTCHD1Q96NR3 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
PTCHD1Q96NR3 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms