Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC17.35■□□□□ 0.37
VMP1Q96GC9 FAM8A6P-201ENST00000407496 1135 ntBASIC17.35■□□□□ 0.37
VMP1Q96GC9 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VMP1Q96GC9 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VMP1Q96GC9 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VMP1Q96GC9 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
VMP1Q96GC9 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VMP1Q96GC9 ELP6-205ENST00000439305 880 ntTSL 2 BASIC17.35■□□□□ 0.37
VMP1Q96GC9 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VMP1Q96GC9 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VMP1Q96GC9 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC17.35■□□□□ 0.37
VMP1Q96GC9 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VMP1Q96GC9 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VMP1Q96GC9 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC17.35■□□□□ 0.37
VMP1Q96GC9 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC17.35■□□□□ 0.37
VMP1Q96GC9 ETFA-216ENST00000560726 942 ntTSL 3 BASIC17.35■□□□□ 0.37
VMP1Q96GC9 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC17.35■□□□□ 0.37
VMP1Q96GC9 RMI2-205ENST00000576027 818 ntTSL 2 BASIC17.35■□□□□ 0.37
VMP1Q96GC9 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC17.35■□□□□ 0.37
VMP1Q96GC9 AC112497.1-201ENST00000624824 639 ntBASIC17.35■□□□□ 0.37
VMP1Q96GC9 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VMP1Q96GC9 KRT8P7-201ENST00000533003 1432 ntBASIC17.35■□□□□ 0.37
VMP1Q96GC9 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VMP1Q96GC9 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VMP1Q96GC9 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VMP1Q96GC9 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VMP1Q96GC9 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VMP1Q96GC9 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC17.35■□□□□ 0.37
VMP1Q96GC9 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
VMP1Q96GC9 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
VMP1Q96GC9 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC17.35■□□□□ 0.37
VMP1Q96GC9 USP39-202ENST00000409025 1946 ntTSL 5 BASIC17.35■□□□□ 0.37
VMP1Q96GC9 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC17.35■□□□□ 0.37
VMP1Q96GC9 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VMP1Q96GC9 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VMP1Q96GC9 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC17.35■□□□□ 0.37
VMP1Q96GC9 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VMP1Q96GC9 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
VMP1Q96GC9 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VMP1Q96GC9 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VMP1Q96GC9 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VMP1Q96GC9 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VMP1Q96GC9 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VMP1Q96GC9 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
VMP1Q96GC9 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VMP1Q96GC9 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
VMP1Q96GC9 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VMP1Q96GC9 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
VMP1Q96GC9 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VMP1Q96GC9 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VMP1Q96GC9 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VMP1Q96GC9 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VMP1Q96GC9 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VMP1Q96GC9 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VMP1Q96GC9 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC17.34■□□□□ 0.37
VMP1Q96GC9 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VMP1Q96GC9 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC17.34■□□□□ 0.37
VMP1Q96GC9 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC17.34■□□□□ 0.37
VMP1Q96GC9 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VMP1Q96GC9 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC17.34■□□□□ 0.37
VMP1Q96GC9 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC17.34■□□□□ 0.37
VMP1Q96GC9 GCSHP2-201ENST00000560971 527 ntBASIC17.34■□□□□ 0.37
VMP1Q96GC9 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VMP1Q96GC9 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VMP1Q96GC9 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
VMP1Q96GC9 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC17.34■□□□□ 0.37
VMP1Q96GC9 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
VMP1Q96GC9 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
VMP1Q96GC9 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VMP1Q96GC9 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC17.34■□□□□ 0.37
VMP1Q96GC9 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VMP1Q96GC9 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
VMP1Q96GC9 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VMP1Q96GC9 CD276-203ENST00000537340 2439 ntTSL 2 BASIC17.33■□□□□ 0.37
VMP1Q96GC9 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
VMP1Q96GC9 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.33■□□□□ 0.37
VMP1Q96GC9 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.37
VMP1Q96GC9 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
VMP1Q96GC9 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
VMP1Q96GC9 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
VMP1Q96GC9 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
VMP1Q96GC9 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC17.33■□□□□ 0.37
VMP1Q96GC9 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
VMP1Q96GC9 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
VMP1Q96GC9 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
VMP1Q96GC9 AC034236.2-201ENST00000606662 1610 ntBASIC17.33■□□□□ 0.37
VMP1Q96GC9 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
VMP1Q96GC9 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
VMP1Q96GC9 HOXB1-202ENST00000577092 1414 ntBASIC17.33■□□□□ 0.36
VMP1Q96GC9 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC17.33■□□□□ 0.36
VMP1Q96GC9 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC17.33■□□□□ 0.36
VMP1Q96GC9 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VMP1Q96GC9 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC17.33■□□□□ 0.36
VMP1Q96GC9 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC17.33■□□□□ 0.36
VMP1Q96GC9 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC17.33■□□□□ 0.36
VMP1Q96GC9 KRT18P35-201ENST00000510488 1269 ntBASIC17.33■□□□□ 0.36
VMP1Q96GC9 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC17.33■□□□□ 0.36
VMP1Q96GC9 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC17.33■□□□□ 0.36
VMP1Q96GC9 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC17.33■□□□□ 0.36
VMP1Q96GC9 NTF6B-201ENST00000591913 560 ntBASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms