Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC23.76■■□□□ 1.39
USHBP1Q8N6Y0 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
USHBP1Q8N6Y0 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC23.76■■□□□ 1.39
USHBP1Q8N6Y0 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
USHBP1Q8N6Y0 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
USHBP1Q8N6Y0 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
USHBP1Q8N6Y0 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
USHBP1Q8N6Y0 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC23.76■■□□□ 1.39
USHBP1Q8N6Y0 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC23.76■■□□□ 1.39
USHBP1Q8N6Y0 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC23.76■■□□□ 1.39
USHBP1Q8N6Y0 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC23.76■■□□□ 1.39
USHBP1Q8N6Y0 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC23.76■■□□□ 1.39
USHBP1Q8N6Y0 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC23.76■■□□□ 1.39
USHBP1Q8N6Y0 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC23.76■■□□□ 1.39
USHBP1Q8N6Y0 AP000867.4-201ENST00000641616 219 ntBASIC23.76■■□□□ 1.39
USHBP1Q8N6Y0 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
USHBP1Q8N6Y0 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
USHBP1Q8N6Y0 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
USHBP1Q8N6Y0 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC23.76■■□□□ 1.39
USHBP1Q8N6Y0 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC23.76■■□□□ 1.39
USHBP1Q8N6Y0 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
USHBP1Q8N6Y0 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
USHBP1Q8N6Y0 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
USHBP1Q8N6Y0 AC010460.3-201ENST00000511359 1579 ntBASIC23.75■■□□□ 1.39
USHBP1Q8N6Y0 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
USHBP1Q8N6Y0 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
USHBP1Q8N6Y0 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
USHBP1Q8N6Y0 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
USHBP1Q8N6Y0 SOD2-201ENST00000337404 991 ntTSL 2 BASIC23.75■■□□□ 1.39
USHBP1Q8N6Y0 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
USHBP1Q8N6Y0 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC23.75■■□□□ 1.39
USHBP1Q8N6Y0 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC23.75■■□□□ 1.39
USHBP1Q8N6Y0 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC23.75■■□□□ 1.39
USHBP1Q8N6Y0 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
USHBP1Q8N6Y0 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC23.75■■□□□ 1.39
USHBP1Q8N6Y0 AL139288.1-201ENST00000623748 933 ntBASIC23.75■■□□□ 1.39
USHBP1Q8N6Y0 SLC25A24-204ENST00000569674 2357 ntBASIC23.75■■□□□ 1.39
USHBP1Q8N6Y0 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
USHBP1Q8N6Y0 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
USHBP1Q8N6Y0 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
USHBP1Q8N6Y0 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC23.75■■□□□ 1.39
USHBP1Q8N6Y0 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
USHBP1Q8N6Y0 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
USHBP1Q8N6Y0 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC23.74■■□□□ 1.39
USHBP1Q8N6Y0 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
USHBP1Q8N6Y0 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC23.74■■□□□ 1.39
USHBP1Q8N6Y0 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
USHBP1Q8N6Y0 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC23.74■■□□□ 1.39
USHBP1Q8N6Y0 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
USHBP1Q8N6Y0 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
USHBP1Q8N6Y0 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC23.74■■□□□ 1.39
USHBP1Q8N6Y0 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC23.74■■□□□ 1.39
USHBP1Q8N6Y0 MED15P5-201ENST00000423150 992 ntBASIC23.74■■□□□ 1.39
USHBP1Q8N6Y0 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC23.74■■□□□ 1.39
USHBP1Q8N6Y0 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC23.74■■□□□ 1.39
USHBP1Q8N6Y0 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
USHBP1Q8N6Y0 RNF151-202ENST00000569210 853 ntTSL 2 BASIC23.74■■□□□ 1.39
USHBP1Q8N6Y0 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
USHBP1Q8N6Y0 AC055717.3-201ENST00000622967 595 ntBASIC23.74■■□□□ 1.39
USHBP1Q8N6Y0 AC008735.5-201ENST00000623544 497 ntBASIC23.74■■□□□ 1.39
USHBP1Q8N6Y0 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
USHBP1Q8N6Y0 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
USHBP1Q8N6Y0 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC23.74■■□□□ 1.39
USHBP1Q8N6Y0 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC23.74■■□□□ 1.39
USHBP1Q8N6Y0 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
USHBP1Q8N6Y0 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
USHBP1Q8N6Y0 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
USHBP1Q8N6Y0 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
USHBP1Q8N6Y0 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
USHBP1Q8N6Y0 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
USHBP1Q8N6Y0 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
USHBP1Q8N6Y0 CTNS-203ENST00000399306 803 ntTSL 3 BASIC23.73■■□□□ 1.39
USHBP1Q8N6Y0 KIRREL3-AS3-201ENST00000404882 831 ntBASIC23.73■■□□□ 1.39
USHBP1Q8N6Y0 LBH-204ENST00000406087 559 ntTSL 4 BASIC23.73■■□□□ 1.39
USHBP1Q8N6Y0 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC23.73■■□□□ 1.39
USHBP1Q8N6Y0 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
USHBP1Q8N6Y0 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC23.73■■□□□ 1.39
USHBP1Q8N6Y0 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
USHBP1Q8N6Y0 KRT8P47-201ENST00000604727 1398 ntBASIC23.73■■□□□ 1.39
USHBP1Q8N6Y0 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
USHBP1Q8N6Y0 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
USHBP1Q8N6Y0 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC23.73■■□□□ 1.39
USHBP1Q8N6Y0 AIRN-201ENST00000601203 4374 ntBASIC23.73■■□□□ 1.39
USHBP1Q8N6Y0 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
USHBP1Q8N6Y0 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
USHBP1Q8N6Y0 AL031598.1-201ENST00000561511 1773 ntBASIC23.73■■□□□ 1.39
USHBP1Q8N6Y0 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC23.72■■□□□ 1.39
USHBP1Q8N6Y0 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
USHBP1Q8N6Y0 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
USHBP1Q8N6Y0 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC23.72■■□□□ 1.39
USHBP1Q8N6Y0 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC23.72■■□□□ 1.39
USHBP1Q8N6Y0 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
USHBP1Q8N6Y0 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
USHBP1Q8N6Y0 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
USHBP1Q8N6Y0 FAM220CP-201ENST00000395253 831 ntBASIC23.72■■□□□ 1.39
USHBP1Q8N6Y0 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
USHBP1Q8N6Y0 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
USHBP1Q8N6Y0 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC23.72■■□□□ 1.39
USHBP1Q8N6Y0 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC23.72■■□□□ 1.39
USHBP1Q8N6Y0 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC23.72■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 60.1 ms