Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 AC011498.5-201ENST00000592027 486 ntBASIC17.69■□□□□ 0.42
VRK3Q8IV63 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
VRK3Q8IV63 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC17.69■□□□□ 0.42
VRK3Q8IV63 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VRK3Q8IV63 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VRK3Q8IV63 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC17.69■□□□□ 0.42
VRK3Q8IV63 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VRK3Q8IV63 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VRK3Q8IV63 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VRK3Q8IV63 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.69■□□□□ 0.42
VRK3Q8IV63 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC17.69■□□□□ 0.42
VRK3Q8IV63 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VRK3Q8IV63 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VRK3Q8IV63 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VRK3Q8IV63 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC17.69■□□□□ 0.42
VRK3Q8IV63 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VRK3Q8IV63 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VRK3Q8IV63 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
VRK3Q8IV63 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VRK3Q8IV63 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.68■□□□□ 0.42
VRK3Q8IV63 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VRK3Q8IV63 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VRK3Q8IV63 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC17.68■□□□□ 0.42
VRK3Q8IV63 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VRK3Q8IV63 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VRK3Q8IV63 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VRK3Q8IV63 AC100803.2-201ENST00000562459 1963 ntBASIC17.68■□□□□ 0.42
VRK3Q8IV63 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
VRK3Q8IV63 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VRK3Q8IV63 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VRK3Q8IV63 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VRK3Q8IV63 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC17.68■□□□□ 0.42
VRK3Q8IV63 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VRK3Q8IV63 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
VRK3Q8IV63 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VRK3Q8IV63 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
VRK3Q8IV63 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VRK3Q8IV63 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
VRK3Q8IV63 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC17.68■□□□□ 0.42
VRK3Q8IV63 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC17.68■□□□□ 0.42
VRK3Q8IV63 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
VRK3Q8IV63 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC17.68■□□□□ 0.42
VRK3Q8IV63 AC116407.4-201ENST00000623319 1061 ntBASIC17.68■□□□□ 0.42
VRK3Q8IV63 AL358472.4-201ENST00000633140 710 ntBASIC17.68■□□□□ 0.42
VRK3Q8IV63 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.68■□□□□ 0.42
VRK3Q8IV63 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
VRK3Q8IV63 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VRK3Q8IV63 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC17.68■□□□□ 0.42
VRK3Q8IV63 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
VRK3Q8IV63 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC17.68■□□□□ 0.42
VRK3Q8IV63 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC17.68■□□□□ 0.42
VRK3Q8IV63 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VRK3Q8IV63 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
VRK3Q8IV63 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
VRK3Q8IV63 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
VRK3Q8IV63 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
VRK3Q8IV63 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
VRK3Q8IV63 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VRK3Q8IV63 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VRK3Q8IV63 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VRK3Q8IV63 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VRK3Q8IV63 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
VRK3Q8IV63 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VRK3Q8IV63 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
VRK3Q8IV63 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VRK3Q8IV63 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC17.67■□□□□ 0.42
VRK3Q8IV63 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
VRK3Q8IV63 TSPY22P-201ENST00000427496 604 ntBASIC17.67■□□□□ 0.42
VRK3Q8IV63 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VRK3Q8IV63 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC17.67■□□□□ 0.42
VRK3Q8IV63 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC17.67■□□□□ 0.42
VRK3Q8IV63 DUTP2-201ENST00000519164 463 ntBASIC17.67■□□□□ 0.42
VRK3Q8IV63 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC17.67■□□□□ 0.42
VRK3Q8IV63 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC17.67■□□□□ 0.42
VRK3Q8IV63 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.67■□□□□ 0.42
VRK3Q8IV63 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC17.67■□□□□ 0.42
VRK3Q8IV63 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC17.67■□□□□ 0.42
VRK3Q8IV63 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC17.67■□□□□ 0.42
VRK3Q8IV63 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC17.67■□□□□ 0.42
VRK3Q8IV63 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC17.67■□□□□ 0.42
VRK3Q8IV63 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.67■□□□□ 0.42
VRK3Q8IV63 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VRK3Q8IV63 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC17.67■□□□□ 0.42
VRK3Q8IV63 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VRK3Q8IV63 AC008764.6-201ENST00000595909 2069 ntBASIC17.67■□□□□ 0.42
VRK3Q8IV63 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC17.67■□□□□ 0.42
VRK3Q8IV63 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VRK3Q8IV63 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
VRK3Q8IV63 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC17.66■□□□□ 0.42
VRK3Q8IV63 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC17.66■□□□□ 0.42
VRK3Q8IV63 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VRK3Q8IV63 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
VRK3Q8IV63 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VRK3Q8IV63 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VRK3Q8IV63 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC17.66■□□□□ 0.42
VRK3Q8IV63 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VRK3Q8IV63 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VRK3Q8IV63 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VRK3Q8IV63 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VRK3Q8IV63 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms