Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC22.15■■□□□ 1.14
USP48Q86UV5 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
USP48Q86UV5 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
USP48Q86UV5 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
USP48Q86UV5 VENTXP7-201ENST00000475503 772 ntBASIC22.15■■□□□ 1.14
USP48Q86UV5 CDV3-207ENST00000508481 661 ntTSL 3 BASIC22.15■■□□□ 1.14
USP48Q86UV5 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC22.15■■□□□ 1.14
USP48Q86UV5 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC22.15■■□□□ 1.14
USP48Q86UV5 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
USP48Q86UV5 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC22.15■■□□□ 1.14
USP48Q86UV5 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
USP48Q86UV5 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
USP48Q86UV5 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC22.15■■□□□ 1.14
USP48Q86UV5 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
USP48Q86UV5 STX6-204ENST00000542060 4809 ntTSL 2 BASIC22.15■■□□□ 1.14
USP48Q86UV5 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC22.15■■□□□ 1.14
USP48Q86UV5 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
USP48Q86UV5 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
USP48Q86UV5 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC22.15■■□□□ 1.14
USP48Q86UV5 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC22.14■■□□□ 1.14
USP48Q86UV5 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
USP48Q86UV5 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.14
USP48Q86UV5 AL109659.2-201ENST00000606809 1674 ntBASIC22.14■■□□□ 1.14
USP48Q86UV5 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
USP48Q86UV5 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.14
USP48Q86UV5 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC22.14■■□□□ 1.13
USP48Q86UV5 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.13
USP48Q86UV5 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC22.14■■□□□ 1.13
USP48Q86UV5 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
USP48Q86UV5 BX842568.4-201ENST00000421222 227 ntBASIC22.14■■□□□ 1.13
USP48Q86UV5 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC22.14■■□□□ 1.13
USP48Q86UV5 AF186996.4-201ENST00000467186 377 ntBASIC22.14■■□□□ 1.13
USP48Q86UV5 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.13
USP48Q86UV5 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC22.14■■□□□ 1.13
USP48Q86UV5 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC22.14■■□□□ 1.13
USP48Q86UV5 RCC2P3-201ENST00000418112 1537 ntBASIC22.14■■□□□ 1.13
USP48Q86UV5 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
USP48Q86UV5 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
USP48Q86UV5 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC22.14■■□□□ 1.13
USP48Q86UV5 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
USP48Q86UV5 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC22.14■■□□□ 1.13
USP48Q86UV5 HOXB1-202ENST00000577092 1414 ntBASIC22.14■■□□□ 1.13
USP48Q86UV5 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
USP48Q86UV5 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC22.14■■□□□ 1.13
USP48Q86UV5 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
USP48Q86UV5 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC22.13■■□□□ 1.13
USP48Q86UV5 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
USP48Q86UV5 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC22.13■■□□□ 1.13
USP48Q86UV5 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC22.13■■□□□ 1.13
USP48Q86UV5 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC22.13■■□□□ 1.13
USP48Q86UV5 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC22.13■■□□□ 1.13
USP48Q86UV5 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
USP48Q86UV5 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
USP48Q86UV5 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
USP48Q86UV5 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
USP48Q86UV5 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC22.13■■□□□ 1.13
USP48Q86UV5 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
USP48Q86UV5 COX10-202ENST00000429152 875 ntTSL 2 BASIC22.13■■□□□ 1.13
USP48Q86UV5 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC22.13■■□□□ 1.13
USP48Q86UV5 RPL13AP23-201ENST00000480739 586 ntBASIC22.13■■□□□ 1.13
USP48Q86UV5 AC093909.1-201ENST00000504731 1122 ntBASIC22.13■■□□□ 1.13
USP48Q86UV5 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
USP48Q86UV5 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC22.13■■□□□ 1.13
USP48Q86UV5 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
USP48Q86UV5 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC22.13■■□□□ 1.13
USP48Q86UV5 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
USP48Q86UV5 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC22.13■■□□□ 1.13
USP48Q86UV5 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
USP48Q86UV5 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC22.13■■□□□ 1.13
USP48Q86UV5 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
USP48Q86UV5 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC22.12■■□□□ 1.13
USP48Q86UV5 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
USP48Q86UV5 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC22.12■■□□□ 1.13
USP48Q86UV5 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC22.12■■□□□ 1.13
USP48Q86UV5 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC22.12■■□□□ 1.13
USP48Q86UV5 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC22.12■■□□□ 1.13
USP48Q86UV5 EMD-201ENST00000369835 966 ntTSL 3 BASIC22.12■■□□□ 1.13
USP48Q86UV5 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC22.12■■□□□ 1.13
USP48Q86UV5 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC22.12■■□□□ 1.13
USP48Q86UV5 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
USP48Q86UV5 RPL18-209ENST00000550645 463 ntTSL 5 BASIC22.12■■□□□ 1.13
USP48Q86UV5 RPL18-214ENST00000552588 559 ntTSL 3 BASIC22.12■■□□□ 1.13
USP48Q86UV5 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC22.12■■□□□ 1.13
USP48Q86UV5 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC22.12■■□□□ 1.13
USP48Q86UV5 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC22.12■■□□□ 1.13
USP48Q86UV5 AL049840.3-201ENST00000602669 611 ntBASIC22.12■■□□□ 1.13
USP48Q86UV5 AL591684.3-201ENST00000605187 298 ntBASIC22.12■■□□□ 1.13
USP48Q86UV5 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC22.12■■□□□ 1.13
USP48Q86UV5 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC22.12■■□□□ 1.13
USP48Q86UV5 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
USP48Q86UV5 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC22.12■■□□□ 1.13
USP48Q86UV5 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
USP48Q86UV5 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
USP48Q86UV5 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
USP48Q86UV5 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
USP48Q86UV5 AL354751.1-201ENST00000412768 1863 ntBASIC22.11■■□□□ 1.13
USP48Q86UV5 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
USP48Q86UV5 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
USP48Q86UV5 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
USP48Q86UV5 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC22.11■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms