Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CSMD3Q7Z407 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
CSMD3Q7Z407 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CSMD3Q7Z407 AC073130.3-201ENST00000624389 2278 ntBASIC12.52□□□□□ -0.4
CSMD3Q7Z407 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.4
CSMD3Q7Z407 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.4
CSMD3Q7Z407 PTMS-202ENST00000389462 773 ntTSL 2 BASIC12.52□□□□□ -0.4
CSMD3Q7Z407 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC12.52□□□□□ -0.4
CSMD3Q7Z407 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC12.52□□□□□ -0.4
CSMD3Q7Z407 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC12.52□□□□□ -0.4
CSMD3Q7Z407 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
CSMD3Q7Z407 AD001527.2-201ENST00000622994 785 ntBASIC12.52□□□□□ -0.4
CSMD3Q7Z407 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
CSMD3Q7Z407 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
CSMD3Q7Z407 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC12.52□□□□□ -0.4
CSMD3Q7Z407 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CSMD3Q7Z407 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
CSMD3Q7Z407 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
CSMD3Q7Z407 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
CSMD3Q7Z407 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC12.52□□□□□ -0.41
CSMD3Q7Z407 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC12.52□□□□□ -0.41
CSMD3Q7Z407 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
CSMD3Q7Z407 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC12.52□□□□□ -0.41
CSMD3Q7Z407 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC12.52□□□□□ -0.41
CSMD3Q7Z407 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC12.52□□□□□ -0.41
CSMD3Q7Z407 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC12.52□□□□□ -0.41
CSMD3Q7Z407 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC12.52□□□□□ -0.41
CSMD3Q7Z407 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC12.52□□□□□ -0.41
CSMD3Q7Z407 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC12.52□□□□□ -0.41
CSMD3Q7Z407 Z92544.3-201ENST00000624747 417 ntBASIC12.52□□□□□ -0.41
CSMD3Q7Z407 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC12.52□□□□□ -0.41
CSMD3Q7Z407 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CSMD3Q7Z407 PUS1-205ENST00000535067 838 ntTSL 3 BASIC12.52□□□□□ -0.41
CSMD3Q7Z407 CIPC-205ENST00000555437 566 ntTSL 3 BASIC12.52□□□□□ -0.41
CSMD3Q7Z407 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC12.52□□□□□ -0.41
CSMD3Q7Z407 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CSMD3Q7Z407 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 CD82-202ENST00000342935 967 ntTSL 5 BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 AC136632.2-201ENST00000512891 861 ntBASIC12.51□□□□□ -0.41
CSMD3Q7Z407 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CSMD3Q7Z407 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CSMD3Q7Z407 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC12.5□□□□□ -0.41
CSMD3Q7Z407 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CSMD3Q7Z407 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CSMD3Q7Z407 RBM7-207ENST00000544582 692 ntTSL 3 BASIC12.5□□□□□ -0.41
CSMD3Q7Z407 AC190387.1-201ENST00000551683 408 ntBASIC12.5□□□□□ -0.41
CSMD3Q7Z407 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC12.5□□□□□ -0.41
CSMD3Q7Z407 AC005498.2-205ENST00000593218 784 ntBASIC12.5□□□□□ -0.41
CSMD3Q7Z407 AC093512.1-201ENST00000617969 520 ntBASIC12.5□□□□□ -0.41
CSMD3Q7Z407 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
CSMD3Q7Z407 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CSMD3Q7Z407 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC12.5□□□□□ -0.41
CSMD3Q7Z407 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC12.5□□□□□ -0.41
CSMD3Q7Z407 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms