Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC16.19■□□□□ 0.18
CLRN1P58418 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLRN1P58418 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC16.19■□□□□ 0.18
CLRN1P58418 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLRN1P58418 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLRN1P58418 TERF1P1-201ENST00000311003 1181 ntBASIC16.19■□□□□ 0.18
CLRN1P58418 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
CLRN1P58418 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLRN1P58418 KIRREL3-AS3-201ENST00000404882 831 ntBASIC16.19■□□□□ 0.18
CLRN1P58418 AC211429.1-201ENST00000415277 523 ntBASIC16.19■□□□□ 0.18
CLRN1P58418 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
CLRN1P58418 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CLRN1P58418 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC16.19■□□□□ 0.18
CLRN1P58418 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC16.19■□□□□ 0.18
CLRN1P58418 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC16.19■□□□□ 0.18
CLRN1P58418 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC16.19■□□□□ 0.18
CLRN1P58418 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
CLRN1P58418 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
CLRN1P58418 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
CLRN1P58418 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC16.19■□□□□ 0.18
CLRN1P58418 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLRN1P58418 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC16.19■□□□□ 0.18
CLRN1P58418 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CLRN1P58418 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CLRN1P58418 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
CLRN1P58418 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLRN1P58418 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC16.19■□□□□ 0.18
CLRN1P58418 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLRN1P58418 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLRN1P58418 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
CLRN1P58418 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CLRN1P58418 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
CLRN1P58418 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
CLRN1P58418 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CLRN1P58418 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC16.18■□□□□ 0.18
CLRN1P58418 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC16.18■□□□□ 0.18
CLRN1P58418 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CLRN1P58418 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CLRN1P58418 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC16.18■□□□□ 0.18
CLRN1P58418 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CLRN1P58418 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CLRN1P58418 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
CLRN1P58418 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CLRN1P58418 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CLRN1P58418 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
CLRN1P58418 AC005521.1-201ENST00000393351 872 ntBASIC16.18■□□□□ 0.18
CLRN1P58418 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC16.18■□□□□ 0.18
CLRN1P58418 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CLRN1P58418 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC16.18■□□□□ 0.18
CLRN1P58418 BX664615.1-201ENST00000443558 458 ntBASIC16.18■□□□□ 0.18
CLRN1P58418 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CLRN1P58418 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC16.18■□□□□ 0.18
CLRN1P58418 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC16.18■□□□□ 0.18
CLRN1P58418 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
CLRN1P58418 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
CLRN1P58418 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CLRN1P58418 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CLRN1P58418 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC16.18■□□□□ 0.18
CLRN1P58418 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
CLRN1P58418 CROCCP1-201ENST00000426910 5675 ntBASIC16.18■□□□□ 0.18
CLRN1P58418 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CLRN1P58418 FLJ13224-201ENST00000313737 1514 ntBASIC16.18■□□□□ 0.18
CLRN1P58418 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CLRN1P58418 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC16.18■□□□□ 0.18
CLRN1P58418 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CLRN1P58418 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CLRN1P58418 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
CLRN1P58418 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CLRN1P58418 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CLRN1P58418 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CLRN1P58418 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
CLRN1P58418 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CLRN1P58418 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CLRN1P58418 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CLRN1P58418 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC16.17■□□□□ 0.18
CLRN1P58418 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CLRN1P58418 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CLRN1P58418 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CLRN1P58418 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
CLRN1P58418 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.17■□□□□ 0.18
CLRN1P58418 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
CLRN1P58418 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CLRN1P58418 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CLRN1P58418 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
CLRN1P58418 PVRIG2P-201ENST00000435460 978 ntBASIC16.17■□□□□ 0.18
CLRN1P58418 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
CLRN1P58418 CD81-212ENST00000526072 1172 ntTSL 5 BASIC16.17■□□□□ 0.18
CLRN1P58418 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC16.17■□□□□ 0.18
CLRN1P58418 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CLRN1P58418 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CLRN1P58418 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CLRN1P58418 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CLRN1P58418 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
CLRN1P58418 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CLRN1P58418 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CLRN1P58418 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC16.17■□□□□ 0.18
CLRN1P58418 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
CLRN1P58418 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC16.17■□□□□ 0.18
CLRN1P58418 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CLRN1P58418 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms