Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDH6P55285 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC18.84■□□□□ 0.61
CDH6P55285 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC18.84■□□□□ 0.61
CDH6P55285 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC18.84■□□□□ 0.61
CDH6P55285 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDH6P55285 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CDH6P55285 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDH6P55285 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDH6P55285 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
CDH6P55285 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDH6P55285 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDH6P55285 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDH6P55285 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CDH6P55285 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDH6P55285 RASA4DP-201ENST00000460726 1199 ntBASIC18.84■□□□□ 0.61
CDH6P55285 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDH6P55285 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDH6P55285 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDH6P55285 AC011558.1-201ENST00000623459 338 ntBASIC18.84■□□□□ 0.61
CDH6P55285 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC18.84■□□□□ 0.61
CDH6P55285 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDH6P55285 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
CDH6P55285 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDH6P55285 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDH6P55285 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CDH6P55285 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDH6P55285 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDH6P55285 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDH6P55285 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDH6P55285 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
CDH6P55285 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
CDH6P55285 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CDH6P55285 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
CDH6P55285 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CDH6P55285 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
CDH6P55285 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
CDH6P55285 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CDH6P55285 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
CDH6P55285 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.6
CDH6P55285 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
CDH6P55285 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
CDH6P55285 KRT18P57-201ENST00000443599 1254 ntBASIC18.83■□□□□ 0.6
CDH6P55285 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC18.83■□□□□ 0.6
CDH6P55285 MNT-208ENST00000575394 606 ntTSL 4 BASIC18.83■□□□□ 0.6
CDH6P55285 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC18.83■□□□□ 0.6
CDH6P55285 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC18.83■□□□□ 0.6
CDH6P55285 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
CDH6P55285 AC134043.2-201ENST00000624206 2238 ntBASIC18.83■□□□□ 0.6
CDH6P55285 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
CDH6P55285 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CDH6P55285 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CDH6P55285 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
CDH6P55285 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CDH6P55285 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC18.83■□□□□ 0.6
CDH6P55285 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
CDH6P55285 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
CDH6P55285 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
CDH6P55285 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CDH6P55285 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CDH6P55285 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC18.82■□□□□ 0.6
CDH6P55285 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDH6P55285 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
CDH6P55285 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDH6P55285 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDH6P55285 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
CDH6P55285 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDH6P55285 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDH6P55285 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDH6P55285 AC117947.1-201ENST00000427448 529 ntBASIC18.82■□□□□ 0.6
CDH6P55285 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC18.82■□□□□ 0.6
CDH6P55285 YBX1P2-201ENST00000489612 999 ntBASIC18.82■□□□□ 0.6
CDH6P55285 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC18.82■□□□□ 0.6
CDH6P55285 AC008687.5-201ENST00000593746 558 ntBASIC18.82■□□□□ 0.6
CDH6P55285 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CDH6P55285 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDH6P55285 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC18.82■□□□□ 0.6
CDH6P55285 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDH6P55285 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC18.82■□□□□ 0.6
CDH6P55285 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
CDH6P55285 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDH6P55285 HLA-DQB1-201ENST00000374943 1656 ntBASIC18.82■□□□□ 0.6
CDH6P55285 AC132938.6-201ENST00000623828 1655 ntBASIC18.82■□□□□ 0.6
CDH6P55285 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC18.82■□□□□ 0.6
CDH6P55285 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDH6P55285 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC18.81■□□□□ 0.6
CDH6P55285 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC18.81■□□□□ 0.6
CDH6P55285 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDH6P55285 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC18.81■□□□□ 0.6
CDH6P55285 NARF-204ENST00000390006 1766 ntTSL 2 BASIC18.81■□□□□ 0.6
CDH6P55285 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC18.81■□□□□ 0.6
CDH6P55285 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CDH6P55285 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
CDH6P55285 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
CDH6P55285 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC18.81■□□□□ 0.6
CDH6P55285 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDH6P55285 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC18.81■□□□□ 0.6
CDH6P55285 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
CDH6P55285 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDH6P55285 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC18.81■□□□□ 0.6
CDH6P55285 SPDYE15P-201ENST00000424157 909 ntBASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms