Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIG3P49916 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
LIG3P49916 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LIG3P49916 GOLGA6L5P-202ENST00000515341 1828 ntBASIC19.03■□□□□ 0.64
LIG3P49916 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
LIG3P49916 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
LIG3P49916 AL353719.1-201ENST00000566847 864 ntBASIC19.03■□□□□ 0.64
LIG3P49916 RN7SL850P-201ENST00000579959 291 ntBASIC19.03■□□□□ 0.64
LIG3P49916 AC092865.7-201ENST00000641832 219 ntBASIC19.03■□□□□ 0.64
LIG3P49916 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIG3P49916 AL645608.8-201ENST00000606034 2086 ntBASIC19.03■□□□□ 0.64
LIG3P49916 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
LIG3P49916 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC19.03■□□□□ 0.64
LIG3P49916 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LIG3P49916 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC19.03■□□□□ 0.64
LIG3P49916 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIG3P49916 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIG3P49916 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIG3P49916 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
LIG3P49916 AD000864.1-201ENST00000624076 2295 ntBASIC19.03■□□□□ 0.64
LIG3P49916 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIG3P49916 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
LIG3P49916 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
LIG3P49916 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
LIG3P49916 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC19.02■□□□□ 0.64
LIG3P49916 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LIG3P49916 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
LIG3P49916 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC19.02■□□□□ 0.64
LIG3P49916 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC19.02■□□□□ 0.64
LIG3P49916 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC19.02■□□□□ 0.64
LIG3P49916 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC19.02■□□□□ 0.64
LIG3P49916 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC19.02■□□□□ 0.64
LIG3P49916 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC19.02■□□□□ 0.64
LIG3P49916 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
LIG3P49916 TMPOP1-202ENST00000424642 1267 ntBASIC19.02■□□□□ 0.64
LIG3P49916 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC19.02■□□□□ 0.64
LIG3P49916 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC19.02■□□□□ 0.64
LIG3P49916 KRT18P57-201ENST00000443599 1254 ntBASIC19.02■□□□□ 0.64
LIG3P49916 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC19.02■□□□□ 0.64
LIG3P49916 AC010203.1-204ENST00000548782 407 ntBASIC19.02■□□□□ 0.64
LIG3P49916 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC19.02■□□□□ 0.64
LIG3P49916 AC010653.2-201ENST00000623505 997 ntBASIC19.02■□□□□ 0.64
LIG3P49916 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LIG3P49916 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
LIG3P49916 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
LIG3P49916 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC19.02■□□□□ 0.64
LIG3P49916 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
LIG3P49916 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
LIG3P49916 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
LIG3P49916 GAS2L1P1-201ENST00000420145 1480 ntBASIC19.02■□□□□ 0.63
LIG3P49916 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
LIG3P49916 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
LIG3P49916 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
LIG3P49916 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC19.02■□□□□ 0.63
LIG3P49916 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
LIG3P49916 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
LIG3P49916 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC19.01■□□□□ 0.63
LIG3P49916 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC19.01■□□□□ 0.63
LIG3P49916 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC19.01■□□□□ 0.63
LIG3P49916 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIG3P49916 AC073508.3-201ENST00000619697 1419 ntBASIC19.01■□□□□ 0.63
LIG3P49916 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIG3P49916 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
LIG3P49916 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIG3P49916 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
LIG3P49916 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIG3P49916 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIG3P49916 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIG3P49916 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC19.01■□□□□ 0.63
LIG3P49916 HMGA1P5-201ENST00000412453 271 ntBASIC19.01■□□□□ 0.63
LIG3P49916 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LIG3P49916 LIN28AP1-201ENST00000429574 405 ntBASIC19.01■□□□□ 0.63
LIG3P49916 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
LIG3P49916 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC19.01■□□□□ 0.63
LIG3P49916 TK2-213ENST00000563369 882 ntTSL 5 BASIC19.01■□□□□ 0.63
LIG3P49916 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LIG3P49916 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIG3P49916 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LIG3P49916 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC19.01■□□□□ 0.63
LIG3P49916 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC19.01■□□□□ 0.63
LIG3P49916 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LIG3P49916 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC19■□□□□ 0.63
LIG3P49916 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
LIG3P49916 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIG3P49916 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
LIG3P49916 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIG3P49916 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC19■□□□□ 0.63
LIG3P49916 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
LIG3P49916 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIG3P49916 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIG3P49916 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIG3P49916 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC19■□□□□ 0.63
LIG3P49916 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC19■□□□□ 0.63
LIG3P49916 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIG3P49916 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC19■□□□□ 0.63
LIG3P49916 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
LIG3P49916 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIG3P49916 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC19■□□□□ 0.63
LIG3P49916 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC19■□□□□ 0.63
LIG3P49916 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC19■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms