Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
HTTP42858 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC20.23■□□□□ 0.83
HTTP42858 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HTTP42858 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC20.23■□□□□ 0.83
HTTP42858 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HTTP42858 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HTTP42858 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HTTP42858 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HTTP42858 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC20.23■□□□□ 0.83
HTTP42858 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
HTTP42858 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC20.23■□□□□ 0.83
HTTP42858 AC112698.1-201ENST00000510299 916 ntBASIC20.23■□□□□ 0.83
HTTP42858 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HTTP42858 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
HTTP42858 AC132938.6-201ENST00000623828 1655 ntBASIC20.23■□□□□ 0.83
HTTP42858 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
HTTP42858 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HTTP42858 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC20.23■□□□□ 0.83
HTTP42858 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC20.22■□□□□ 0.83
HTTP42858 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
HTTP42858 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HTTP42858 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HTTP42858 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC20.22■□□□□ 0.83
HTTP42858 CD9-202ENST00000382515 1229 ntTSL 5 BASIC20.22■□□□□ 0.83
HTTP42858 YTHDF3-AS1-201ENST00000603538 718 ntBASIC20.22■□□□□ 0.83
HTTP42858 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
HTTP42858 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HTTP42858 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
HTTP42858 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
HTTP42858 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HTTP42858 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
HTTP42858 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC20.22■□□□□ 0.83
HTTP42858 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC20.22■□□□□ 0.83
HTTP42858 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC20.22■□□□□ 0.83
HTTP42858 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC20.22■□□□□ 0.83
HTTP42858 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HTTP42858 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC20.22■□□□□ 0.83
HTTP42858 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
HTTP42858 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
HTTP42858 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
HTTP42858 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HTTP42858 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC20.21■□□□□ 0.83
HTTP42858 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC20.21■□□□□ 0.83
HTTP42858 AC004706.3-202ENST00000621574 984 ntBASIC20.21■□□□□ 0.83
HTTP42858 AL022326.1-202ENST00000641533 845 ntBASIC20.21■□□□□ 0.83
HTTP42858 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC20.21■□□□□ 0.83
HTTP42858 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HTTP42858 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HTTP42858 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HTTP42858 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HTTP42858 DUT-210ENST00000559935 569 ntTSL 3 BASIC20.21■□□□□ 0.83
HTTP42858 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HTTP42858 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC20.21■□□□□ 0.83
HTTP42858 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.21■□□□□ 0.83
HTTP42858 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
HTTP42858 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HTTP42858 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HTTP42858 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC20.21■□□□□ 0.83
HTTP42858 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
HTTP42858 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC20.2■□□□□ 0.82
HTTP42858 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
HTTP42858 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC20.2■□□□□ 0.82
HTTP42858 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
HTTP42858 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC20.2■□□□□ 0.82
HTTP42858 RIN3-211ENST00000557762 517 ntTSL 3 BASIC20.2■□□□□ 0.82
HTTP42858 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
HTTP42858 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC20.2■□□□□ 0.82
HTTP42858 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
HTTP42858 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC20.2■□□□□ 0.82
HTTP42858 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HTTP42858 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.2■□□□□ 0.82
HTTP42858 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC20.2■□□□□ 0.82
HTTP42858 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC20.2■□□□□ 0.82
HTTP42858 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HTTP42858 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC20.2■□□□□ 0.82
HTTP42858 AC004461.1-201ENST00000412461 403 ntBASIC20.2■□□□□ 0.82
HTTP42858 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC20.2■□□□□ 0.82
HTTP42858 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC20.2■□□□□ 0.82
HTTP42858 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC20.2■□□□□ 0.82
HTTP42858 AL589182.2-201ENST00000619332 1049 ntBASIC20.2■□□□□ 0.82
HTTP42858 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HTTP42858 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC20.2■□□□□ 0.82
HTTP42858 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HTTP42858 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC20.2■□□□□ 0.82
HTTP42858 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
HTTP42858 PRYP5-201ENST00000451909 266 ntBASIC20.2■□□□□ 0.82
HTTP42858 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
HTTP42858 IGHV3-65-201ENST00000523210 341 ntBASIC20.2■□□□□ 0.82
HTTP42858 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC20.2■□□□□ 0.82
HTTP42858 MIR4751-201ENST00000578027 74 ntBASIC20.2■□□□□ 0.82
HTTP42858 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC20.2■□□□□ 0.82
HTTP42858 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC20.2■□□□□ 0.82
HTTP42858 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HTTP42858 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC20.19■□□□□ 0.82
HTTP42858 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HTTP42858 AL032819.2-201ENST00000624543 2162 ntBASIC20.19■□□□□ 0.82
HTTP42858 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HTTP42858 SLC4A1APP2-201ENST00000424054 1259 ntBASIC20.19■□□□□ 0.82
HTTP42858 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC20.19■□□□□ 0.82
HTTP42858 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms