Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
RFC4P35249 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
RFC4P35249 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
RFC4P35249 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC22.65■■□□□ 1.22
RFC4P35249 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC22.65■■□□□ 1.22
RFC4P35249 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
RFC4P35249 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC22.65■■□□□ 1.22
RFC4P35249 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
RFC4P35249 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC22.65■■□□□ 1.22
RFC4P35249 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC22.65■■□□□ 1.22
RFC4P35249 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC22.65■■□□□ 1.22
RFC4P35249 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC22.65■■□□□ 1.22
RFC4P35249 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC22.65■■□□□ 1.22
RFC4P35249 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
RFC4P35249 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC22.65■■□□□ 1.22
RFC4P35249 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
RFC4P35249 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
RFC4P35249 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC22.65■■□□□ 1.22
RFC4P35249 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC22.65■■□□□ 1.22
RFC4P35249 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC22.65■■□□□ 1.22
RFC4P35249 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
RFC4P35249 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC22.65■■□□□ 1.22
RFC4P35249 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC22.65■■□□□ 1.22
RFC4P35249 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
RFC4P35249 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
RFC4P35249 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
RFC4P35249 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC22.64■■□□□ 1.22
RFC4P35249 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
RFC4P35249 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.21
RFC4P35249 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
RFC4P35249 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
RFC4P35249 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC22.64■■□□□ 1.21
RFC4P35249 YBX1P5-201ENST00000509441 847 ntBASIC22.64■■□□□ 1.21
RFC4P35249 TCAP-202ENST00000578283 583 ntTSL 5 BASIC22.64■■□□□ 1.21
RFC4P35249 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC22.64■■□□□ 1.21
RFC4P35249 MIR4469-201ENST00000583919 79 ntBASIC22.64■■□□□ 1.21
RFC4P35249 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC22.64■■□□□ 1.21
RFC4P35249 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
RFC4P35249 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC22.64■■□□□ 1.21
RFC4P35249 COBL-210ENST00000632460 1941 ntTSL 5 BASIC22.64■■□□□ 1.21
RFC4P35249 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC22.64■■□□□ 1.21
RFC4P35249 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
RFC4P35249 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
RFC4P35249 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
RFC4P35249 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.21
RFC4P35249 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.21
RFC4P35249 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC22.63■■□□□ 1.21
RFC4P35249 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
RFC4P35249 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
RFC4P35249 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC22.63■■□□□ 1.21
RFC4P35249 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
RFC4P35249 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
RFC4P35249 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
RFC4P35249 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
RFC4P35249 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
RFC4P35249 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC22.63■■□□□ 1.21
RFC4P35249 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
RFC4P35249 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC22.63■■□□□ 1.21
RFC4P35249 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC22.63■■□□□ 1.21
RFC4P35249 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
RFC4P35249 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
RFC4P35249 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC22.63■■□□□ 1.21
RFC4P35249 METTL26-205ENST00000397666 726 ntTSL 2 BASIC22.63■■□□□ 1.21
RFC4P35249 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC22.63■■□□□ 1.21
RFC4P35249 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC22.63■■□□□ 1.21
RFC4P35249 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
RFC4P35249 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC22.63■■□□□ 1.21
RFC4P35249 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC22.63■■□□□ 1.21
RFC4P35249 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC22.63■■□□□ 1.21
RFC4P35249 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
RFC4P35249 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
RFC4P35249 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC22.63■■□□□ 1.21
RFC4P35249 AC002310.6-201ENST00000624451 1377 ntBASIC22.63■■□□□ 1.21
RFC4P35249 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC22.62■■□□□ 1.21
RFC4P35249 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
RFC4P35249 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC22.62■■□□□ 1.21
RFC4P35249 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC22.62■■□□□ 1.21
RFC4P35249 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC22.62■■□□□ 1.21
RFC4P35249 CYMP-203ENST00000474680 1263 ntBASIC22.62■■□□□ 1.21
RFC4P35249 RFPL4AP1-201ENST00000530883 850 ntBASIC22.62■■□□□ 1.21
RFC4P35249 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC22.62■■□□□ 1.21
RFC4P35249 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC22.62■■□□□ 1.21
RFC4P35249 MIR3197-201ENST00000582241 73 ntBASIC22.62■■□□□ 1.21
RFC4P35249 AD001527.2-201ENST00000622994 785 ntBASIC22.62■■□□□ 1.21
RFC4P35249 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
RFC4P35249 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC22.62■■□□□ 1.21
RFC4P35249 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC22.62■■□□□ 1.21
RFC4P35249 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC22.62■■□□□ 1.21
RFC4P35249 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC22.62■■□□□ 1.21
RFC4P35249 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
RFC4P35249 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC22.62■■□□□ 1.21
RFC4P35249 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
RFC4P35249 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
RFC4P35249 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
RFC4P35249 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
RFC4P35249 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC22.61■■□□□ 1.21
RFC4P35249 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC22.61■■□□□ 1.21
RFC4P35249 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC22.61■■□□□ 1.21
RFC4P35249 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC22.61■■□□□ 1.21
RFC4P35249 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 12.1 ms