Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SMARCA1P28370 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SMARCA1P28370 NSUN5P1-202ENST00000421140 1535 ntBASIC20.73■□□□□ 0.91
SMARCA1P28370 NSUN5P2-203ENST00000457352 1529 ntBASIC20.73■□□□□ 0.91
SMARCA1P28370 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
SMARCA1P28370 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMARCA1P28370 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMARCA1P28370 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMARCA1P28370 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMARCA1P28370 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
SMARCA1P28370 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMARCA1P28370 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMARCA1P28370 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SMARCA1P28370 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC20.72■□□□□ 0.91
SMARCA1P28370 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SMARCA1P28370 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
SMARCA1P28370 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC20.72■□□□□ 0.91
SMARCA1P28370 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC20.72■□□□□ 0.91
SMARCA1P28370 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC20.72■□□□□ 0.91
SMARCA1P28370 AC009533.2-201ENST00000543664 586 ntBASIC20.72■□□□□ 0.91
SMARCA1P28370 AC074051.2-201ENST00000565115 352 ntBASIC20.72■□□□□ 0.91
SMARCA1P28370 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC20.72■□□□□ 0.91
SMARCA1P28370 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMARCA1P28370 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC20.72■□□□□ 0.91
SMARCA1P28370 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC20.72■□□□□ 0.91
SMARCA1P28370 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMARCA1P28370 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMARCA1P28370 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SMARCA1P28370 AP000997.3-201ENST00000623333 2250 ntBASIC20.72■□□□□ 0.91
SMARCA1P28370 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC20.72■□□□□ 0.91
SMARCA1P28370 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMARCA1P28370 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMARCA1P28370 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC20.72■□□□□ 0.91
SMARCA1P28370 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC20.72■□□□□ 0.91
SMARCA1P28370 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMARCA1P28370 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC20.72■□□□□ 0.91
SMARCA1P28370 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMARCA1P28370 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMARCA1P28370 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC20.72■□□□□ 0.91
SMARCA1P28370 STK4-201ENST00000372801 2038 ntTSL 2 BASIC20.71■□□□□ 0.91
SMARCA1P28370 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC20.71■□□□□ 0.91
SMARCA1P28370 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC20.71■□□□□ 0.91
SMARCA1P28370 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SMARCA1P28370 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC20.71■□□□□ 0.91
SMARCA1P28370 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SMARCA1P28370 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SMARCA1P28370 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SMARCA1P28370 BET1L-206ENST00000486280 665 ntTSL 3 BASIC20.71■□□□□ 0.91
SMARCA1P28370 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC20.71■□□□□ 0.91
SMARCA1P28370 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC20.71■□□□□ 0.91
SMARCA1P28370 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC20.71■□□□□ 0.91
SMARCA1P28370 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
SMARCA1P28370 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SMARCA1P28370 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
SMARCA1P28370 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SMARCA1P28370 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC20.71■□□□□ 0.91
SMARCA1P28370 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC20.71■□□□□ 0.91
SMARCA1P28370 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SMARCA1P28370 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
SMARCA1P28370 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC20.71■□□□□ 0.91
SMARCA1P28370 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SMARCA1P28370 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
SMARCA1P28370 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SMARCA1P28370 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SMARCA1P28370 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC20.7■□□□□ 0.9
SMARCA1P28370 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SMARCA1P28370 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SMARCA1P28370 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SMARCA1P28370 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SMARCA1P28370 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC20.7■□□□□ 0.9
SMARCA1P28370 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
SMARCA1P28370 MEG3-211ENST00000452514 461 ntTSL 3 BASIC20.7■□□□□ 0.9
SMARCA1P28370 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SMARCA1P28370 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC20.7■□□□□ 0.9
SMARCA1P28370 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC20.7■□□□□ 0.9
SMARCA1P28370 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC20.7■□□□□ 0.9
SMARCA1P28370 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SMARCA1P28370 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
SMARCA1P28370 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SMARCA1P28370 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SMARCA1P28370 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
SMARCA1P28370 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC20.7■□□□□ 0.9
SMARCA1P28370 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SMARCA1P28370 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SMARCA1P28370 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC20.7■□□□□ 0.9
SMARCA1P28370 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SMARCA1P28370 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
SMARCA1P28370 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SMARCA1P28370 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC20.69■□□□□ 0.9
SMARCA1P28370 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SMARCA1P28370 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SMARCA1P28370 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SMARCA1P28370 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SMARCA1P28370 SKP2-204ENST00000508514 821 ntTSL 3 BASIC20.69■□□□□ 0.9
SMARCA1P28370 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC20.69■□□□□ 0.9
SMARCA1P28370 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC20.69■□□□□ 0.9
SMARCA1P28370 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC20.69■□□□□ 0.9
SMARCA1P28370 CLEC4GP1-201ENST00000596555 870 ntBASIC20.69■□□□□ 0.9
SMARCA1P28370 AC116407.2-201ENST00000613639 860 ntBASIC20.69■□□□□ 0.9
SMARCA1P28370 CCNC-219ENST00000627680 896 ntTSL 5 BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms