Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 CD9-202ENST00000382515 1229 ntTSL 5 BASIC17.27■□□□□ 0.36
COL5A1P20908 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC17.27■□□□□ 0.36
COL5A1P20908 ALG1L5P-201ENST00000482043 771 ntBASIC17.27■□□□□ 0.36
COL5A1P20908 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
COL5A1P20908 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
COL5A1P20908 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC17.27■□□□□ 0.36
COL5A1P20908 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC17.27■□□□□ 0.36
COL5A1P20908 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC17.27■□□□□ 0.36
COL5A1P20908 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL5A1P20908 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL5A1P20908 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC17.27■□□□□ 0.36
COL5A1P20908 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL5A1P20908 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL5A1P20908 AC093503.3-201ENST00000624917 2352 ntBASIC17.27■□□□□ 0.35
COL5A1P20908 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL5A1P20908 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
COL5A1P20908 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC17.27■□□□□ 0.35
COL5A1P20908 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
COL5A1P20908 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
COL5A1P20908 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL5A1P20908 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC17.26■□□□□ 0.35
COL5A1P20908 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC17.26■□□□□ 0.35
COL5A1P20908 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
COL5A1P20908 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL5A1P20908 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC17.26■□□□□ 0.35
COL5A1P20908 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL5A1P20908 MCCD1P2-201ENST00000423228 335 ntBASIC17.26■□□□□ 0.35
COL5A1P20908 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC17.26■□□□□ 0.35
COL5A1P20908 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC17.26■□□□□ 0.35
COL5A1P20908 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC17.26■□□□□ 0.35
COL5A1P20908 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC17.26■□□□□ 0.35
COL5A1P20908 TCAP-202ENST00000578283 583 ntTSL 5 BASIC17.26■□□□□ 0.35
COL5A1P20908 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
COL5A1P20908 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC17.26■□□□□ 0.35
COL5A1P20908 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC17.26■□□□□ 0.35
COL5A1P20908 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
COL5A1P20908 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
COL5A1P20908 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL5A1P20908 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC17.26■□□□□ 0.35
COL5A1P20908 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC17.26■□□□□ 0.35
COL5A1P20908 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL5A1P20908 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC17.26■□□□□ 0.35
COL5A1P20908 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC17.26■□□□□ 0.35
COL5A1P20908 AC010460.3-201ENST00000511359 1579 ntBASIC17.26■□□□□ 0.35
COL5A1P20908 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC17.26■□□□□ 0.35
COL5A1P20908 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.26■□□□□ 0.35
COL5A1P20908 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL5A1P20908 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL5A1P20908 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL5A1P20908 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC17.26■□□□□ 0.35
COL5A1P20908 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
COL5A1P20908 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC17.26■□□□□ 0.35
COL5A1P20908 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC17.26■□□□□ 0.35
COL5A1P20908 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC17.26■□□□□ 0.35
COL5A1P20908 CFL1-212ENST00000531413 636 ntTSL 3 BASIC17.26■□□□□ 0.35
COL5A1P20908 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC17.26■□□□□ 0.35
COL5A1P20908 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
COL5A1P20908 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL5A1P20908 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL5A1P20908 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL5A1P20908 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COL5A1P20908 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL5A1P20908 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC17.25■□□□□ 0.35
COL5A1P20908 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC17.25■□□□□ 0.35
COL5A1P20908 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
COL5A1P20908 AL499627.1-201ENST00000569373 2188 ntBASIC17.25■□□□□ 0.35
COL5A1P20908 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL5A1P20908 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC17.25■□□□□ 0.35
COL5A1P20908 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC17.25■□□□□ 0.35
COL5A1P20908 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
COL5A1P20908 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC17.25■□□□□ 0.35
COL5A1P20908 AC211486.1-202ENST00000416371 468 ntBASIC17.25■□□□□ 0.35
COL5A1P20908 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL5A1P20908 AC211476.1-201ENST00000503899 468 ntBASIC17.25■□□□□ 0.35
COL5A1P20908 AC064836.3-201ENST00000607928 673 ntBASIC17.25■□□□□ 0.35
COL5A1P20908 AL022326.1-202ENST00000641533 845 ntBASIC17.25■□□□□ 0.35
COL5A1P20908 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC17.25■□□□□ 0.35
COL5A1P20908 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
COL5A1P20908 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.25■□□□□ 0.35
COL5A1P20908 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC17.25■□□□□ 0.35
COL5A1P20908 AC099343.3-201ENST00000605834 2503 ntBASIC17.25■□□□□ 0.35
COL5A1P20908 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC17.25■□□□□ 0.35
COL5A1P20908 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC17.25■□□□□ 0.35
COL5A1P20908 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.25■□□□□ 0.35
COL5A1P20908 KRT8P47-201ENST00000604727 1398 ntBASIC17.25■□□□□ 0.35
COL5A1P20908 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL5A1P20908 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC17.24■□□□□ 0.35
COL5A1P20908 AC023274.1-201ENST00000418278 595 ntBASIC17.24■□□□□ 0.35
COL5A1P20908 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC17.24■□□□□ 0.35
COL5A1P20908 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC17.24■□□□□ 0.35
COL5A1P20908 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
COL5A1P20908 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC17.24■□□□□ 0.35
COL5A1P20908 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COL5A1P20908 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC17.24■□□□□ 0.35
COL5A1P20908 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC17.24■□□□□ 0.35
COL5A1P20908 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL5A1P20908 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC17.24■□□□□ 0.35
COL5A1P20908 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL5A1P20908 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC17.24■□□□□ 0.35
COL5A1P20908 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms