Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
COL6A1P12109 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC19.91■□□□□ 0.78
COL6A1P12109 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL6A1P12109 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL6A1P12109 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
COL6A1P12109 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
COL6A1P12109 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC19.9■□□□□ 0.78
COL6A1P12109 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
COL6A1P12109 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL6A1P12109 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC19.9■□□□□ 0.78
COL6A1P12109 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL6A1P12109 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
COL6A1P12109 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
COL6A1P12109 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL6A1P12109 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL6A1P12109 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
COL6A1P12109 WDR53-203ENST00000429115 683 ntTSL 2 BASIC19.9■□□□□ 0.78
COL6A1P12109 LHX6-205ENST00000464484 666 ntTSL 2 BASIC19.9■□□□□ 0.78
COL6A1P12109 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC19.9■□□□□ 0.78
COL6A1P12109 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC19.9■□□□□ 0.78
COL6A1P12109 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC19.9■□□□□ 0.78
COL6A1P12109 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
COL6A1P12109 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC19.9■□□□□ 0.78
COL6A1P12109 AC027612.4-201ENST00000605371 583 ntBASIC19.9■□□□□ 0.78
COL6A1P12109 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
COL6A1P12109 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC19.9■□□□□ 0.78
COL6A1P12109 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
COL6A1P12109 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL6A1P12109 AC093484.2-201ENST00000580996 2166 ntBASIC19.9■□□□□ 0.78
COL6A1P12109 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL6A1P12109 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL6A1P12109 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
COL6A1P12109 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC19.89■□□□□ 0.77
COL6A1P12109 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
COL6A1P12109 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC19.89■□□□□ 0.77
COL6A1P12109 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC19.89■□□□□ 0.77
COL6A1P12109 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
COL6A1P12109 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC19.89■□□□□ 0.77
COL6A1P12109 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC19.89■□□□□ 0.77
COL6A1P12109 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
COL6A1P12109 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC19.89■□□□□ 0.77
COL6A1P12109 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC19.89■□□□□ 0.77
COL6A1P12109 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC19.89■□□□□ 0.77
COL6A1P12109 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC19.89■□□□□ 0.77
COL6A1P12109 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC19.89■□□□□ 0.77
COL6A1P12109 AC099343.3-201ENST00000605834 2503 ntBASIC19.89■□□□□ 0.77
COL6A1P12109 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
COL6A1P12109 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
COL6A1P12109 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC19.88■□□□□ 0.77
COL6A1P12109 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC19.88■□□□□ 0.77
COL6A1P12109 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL6A1P12109 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC19.88■□□□□ 0.77
COL6A1P12109 SIGLEC16-201ENST00000599858 1437 ntBASIC19.88■□□□□ 0.77
COL6A1P12109 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC19.88■□□□□ 0.77
COL6A1P12109 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
COL6A1P12109 METTL26-205ENST00000397666 726 ntTSL 2 BASIC19.88■□□□□ 0.77
COL6A1P12109 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
COL6A1P12109 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC19.88■□□□□ 0.77
COL6A1P12109 AC007967.3-201ENST00000434308 558 ntBASIC19.88■□□□□ 0.77
COL6A1P12109 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC19.88■□□□□ 0.77
COL6A1P12109 AL513190.1-201ENST00000621254 727 ntBASIC19.88■□□□□ 0.77
COL6A1P12109 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC19.88■□□□□ 0.77
COL6A1P12109 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19.88■□□□□ 0.77
COL6A1P12109 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL6A1P12109 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL6A1P12109 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC19.87■□□□□ 0.77
COL6A1P12109 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL6A1P12109 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL6A1P12109 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
COL6A1P12109 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC19.87■□□□□ 0.77
COL6A1P12109 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC19.87■□□□□ 0.77
COL6A1P12109 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
COL6A1P12109 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL6A1P12109 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC19.87■□□□□ 0.77
COL6A1P12109 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL6A1P12109 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC19.87■□□□□ 0.77
COL6A1P12109 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL6A1P12109 CD82-202ENST00000342935 967 ntTSL 5 BASIC19.87■□□□□ 0.77
COL6A1P12109 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC19.87■□□□□ 0.77
COL6A1P12109 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL6A1P12109 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC19.87■□□□□ 0.77
COL6A1P12109 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC19.87■□□□□ 0.77
COL6A1P12109 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC19.87■□□□□ 0.77
COL6A1P12109 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC19.87■□□□□ 0.77
COL6A1P12109 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC19.87■□□□□ 0.77
COL6A1P12109 AL078644.1-201ENST00000609881 752 ntBASIC19.87■□□□□ 0.77
COL6A1P12109 AC004817.3-201ENST00000602957 2129 ntBASIC19.87■□□□□ 0.77
COL6A1P12109 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC19.87■□□□□ 0.77
COL6A1P12109 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL6A1P12109 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC19.86■□□□□ 0.77
COL6A1P12109 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC19.86■□□□□ 0.77
COL6A1P12109 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
COL6A1P12109 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
COL6A1P12109 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
COL6A1P12109 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC19.86■□□□□ 0.77
COL6A1P12109 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL6A1P12109 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
COL6A1P12109 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL6A1P12109 CRYGEP-201ENST00000412192 528 ntBASIC19.86■□□□□ 0.77
COL6A1P12109 WBP2-203ENST00000433525 928 ntTSL 2 BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms