Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
HOXC4P09017 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
HOXC4P09017 AP005117.1-201ENST00000584346 1413 ntBASIC17.59■□□□□ 0.41
HOXC4P09017 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC17.59■□□□□ 0.41
HOXC4P09017 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HOXC4P09017 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HOXC4P09017 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HOXC4P09017 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC17.59■□□□□ 0.41
HOXC4P09017 AC009078.2-202ENST00000463353 338 ntBASIC17.59■□□□□ 0.41
HOXC4P09017 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC17.59■□□□□ 0.41
HOXC4P09017 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC17.59■□□□□ 0.41
HOXC4P09017 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HOXC4P09017 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC17.59■□□□□ 0.41
HOXC4P09017 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.59■□□□□ 0.41
HOXC4P09017 AC008608.2-201ENST00000606089 416 ntBASIC17.59■□□□□ 0.41
HOXC4P09017 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC17.59■□□□□ 0.41
HOXC4P09017 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HOXC4P09017 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HOXC4P09017 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC17.59■□□□□ 0.41
HOXC4P09017 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HOXC4P09017 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HOXC4P09017 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.59■□□□□ 0.41
HOXC4P09017 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
HOXC4P09017 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.58■□□□□ 0.41
HOXC4P09017 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HOXC4P09017 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HOXC4P09017 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
HOXC4P09017 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HOXC4P09017 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HOXC4P09017 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.41
HOXC4P09017 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HOXC4P09017 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
HOXC4P09017 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC17.58■□□□□ 0.4
HOXC4P09017 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
HOXC4P09017 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HOXC4P09017 FUOM-202ENST00000368551 628 ntTSL 3 BASIC17.58■□□□□ 0.4
HOXC4P09017 COX5BP2-201ENST00000392354 334 ntBASIC17.58■□□□□ 0.4
HOXC4P09017 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC17.58■□□□□ 0.4
HOXC4P09017 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HOXC4P09017 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC17.58■□□□□ 0.4
HOXC4P09017 SRP19-202ENST00000445150 833 ntTSL 2 BASIC17.58■□□□□ 0.4
HOXC4P09017 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC17.58■□□□□ 0.4
HOXC4P09017 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC17.58■□□□□ 0.4
HOXC4P09017 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC17.58■□□□□ 0.4
HOXC4P09017 SLC25A6P4-201ENST00000586535 553 ntBASIC17.58■□□□□ 0.4
HOXC4P09017 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC17.58■□□□□ 0.4
HOXC4P09017 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC17.58■□□□□ 0.4
HOXC4P09017 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
HOXC4P09017 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HOXC4P09017 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HOXC4P09017 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HOXC4P09017 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HOXC4P09017 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HOXC4P09017 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HOXC4P09017 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
HOXC4P09017 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HOXC4P09017 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
HOXC4P09017 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
HOXC4P09017 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HOXC4P09017 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HOXC4P09017 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC17.57■□□□□ 0.4
HOXC4P09017 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC17.57■□□□□ 0.4
HOXC4P09017 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC17.57■□□□□ 0.4
HOXC4P09017 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HOXC4P09017 PAN3-AS1-201ENST00000563843 1351 ntBASIC17.57■□□□□ 0.4
HOXC4P09017 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC17.57■□□□□ 0.4
HOXC4P09017 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HOXC4P09017 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.57■□□□□ 0.4
HOXC4P09017 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC17.57■□□□□ 0.4
HOXC4P09017 SOD2-201ENST00000337404 991 ntTSL 2 BASIC17.57■□□□□ 0.4
HOXC4P09017 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
HOXC4P09017 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
HOXC4P09017 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC17.57■□□□□ 0.4
HOXC4P09017 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC17.57■□□□□ 0.4
HOXC4P09017 FGFR3P6-201ENST00000457012 610 ntBASIC17.57■□□□□ 0.4
HOXC4P09017 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC17.57■□□□□ 0.4
HOXC4P09017 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HOXC4P09017 AP001269.4-201ENST00000609611 512 ntBASIC17.57■□□□□ 0.4
HOXC4P09017 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
HOXC4P09017 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HOXC4P09017 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.57■□□□□ 0.4
HOXC4P09017 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.57■□□□□ 0.4
HOXC4P09017 AC090164.3-201ENST00000610780 2143 ntBASIC17.57■□□□□ 0.4
HOXC4P09017 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
HOXC4P09017 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HOXC4P09017 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC17.57■□□□□ 0.4
HOXC4P09017 AC135776.1-201ENST00000319817 2481 ntBASIC17.57■□□□□ 0.4
HOXC4P09017 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HOXC4P09017 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HOXC4P09017 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HOXC4P09017 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HOXC4P09017 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HOXC4P09017 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HOXC4P09017 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC17.56■□□□□ 0.4
HOXC4P09017 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HOXC4P09017 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HOXC4P09017 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
HOXC4P09017 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC17.56■□□□□ 0.4
HOXC4P09017 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
HOXC4P09017 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms