Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SIX3O95343 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC17.71■□□□□ 0.43
SIX3O95343 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC17.71■□□□□ 0.43
SIX3O95343 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC17.71■□□□□ 0.43
SIX3O95343 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC17.71■□□□□ 0.43
SIX3O95343 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
SIX3O95343 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SIX3O95343 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
SIX3O95343 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC17.71■□□□□ 0.43
SIX3O95343 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SIX3O95343 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.71■□□□□ 0.43
SIX3O95343 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SIX3O95343 KRT18P55-202ENST00000578578 1546 ntBASIC17.71■□□□□ 0.43
SIX3O95343 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SIX3O95343 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC17.71■□□□□ 0.43
SIX3O95343 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.71■□□□□ 0.42
SIX3O95343 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC17.71■□□□□ 0.42
SIX3O95343 AC132938.6-201ENST00000623828 1655 ntBASIC17.71■□□□□ 0.42
SIX3O95343 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SIX3O95343 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SIX3O95343 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SIX3O95343 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SIX3O95343 CRAT-202ENST00000393384 973 ntTSL 2 BASIC17.7■□□□□ 0.42
SIX3O95343 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SIX3O95343 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
SIX3O95343 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC17.7■□□□□ 0.42
SIX3O95343 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC17.7■□□□□ 0.42
SIX3O95343 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SIX3O95343 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
SIX3O95343 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SIX3O95343 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
SIX3O95343 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SIX3O95343 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
SIX3O95343 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SIX3O95343 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SIX3O95343 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
SIX3O95343 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC17.7■□□□□ 0.42
SIX3O95343 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SIX3O95343 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SIX3O95343 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SIX3O95343 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
SIX3O95343 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SIX3O95343 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SIX3O95343 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SIX3O95343 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.69■□□□□ 0.42
SIX3O95343 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
SIX3O95343 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SIX3O95343 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SIX3O95343 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
SIX3O95343 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SIX3O95343 GAD2-202ENST00000376248 680 ntTSL 5 BASIC17.69■□□□□ 0.42
SIX3O95343 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC17.69■□□□□ 0.42
SIX3O95343 KIRREL3-AS3-201ENST00000404882 831 ntBASIC17.69■□□□□ 0.42
SIX3O95343 AL596275.1-201ENST00000423464 877 ntBASIC17.69■□□□□ 0.42
SIX3O95343 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC17.69■□□□□ 0.42
SIX3O95343 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC17.69■□□□□ 0.42
SIX3O95343 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC17.69■□□□□ 0.42
SIX3O95343 REEP1-209ENST00000541910 969 ntTSL 2 BASIC17.69■□□□□ 0.42
SIX3O95343 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
SIX3O95343 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
SIX3O95343 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.69■□□□□ 0.42
SIX3O95343 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SIX3O95343 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SIX3O95343 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC17.69■□□□□ 0.42
SIX3O95343 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SIX3O95343 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SIX3O95343 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SIX3O95343 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC17.68■□□□□ 0.42
SIX3O95343 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC17.68■□□□□ 0.42
SIX3O95343 PP12613-201ENST00000424958 2230 ntBASIC17.68■□□□□ 0.42
SIX3O95343 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
SIX3O95343 AC106820.2-201ENST00000563775 3264 ntBASIC17.68■□□□□ 0.42
SIX3O95343 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SIX3O95343 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC17.68■□□□□ 0.42
SIX3O95343 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SIX3O95343 AC100803.2-201ENST00000562459 1963 ntBASIC17.68■□□□□ 0.42
SIX3O95343 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC17.68■□□□□ 0.42
SIX3O95343 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SIX3O95343 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
SIX3O95343 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
SIX3O95343 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SIX3O95343 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SIX3O95343 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SIX3O95343 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SIX3O95343 HMGA1P5-201ENST00000412453 271 ntBASIC17.68■□□□□ 0.42
SIX3O95343 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC17.68■□□□□ 0.42
SIX3O95343 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SIX3O95343 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC17.68■□□□□ 0.42
SIX3O95343 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SIX3O95343 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC17.68■□□□□ 0.42
SIX3O95343 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SIX3O95343 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SIX3O95343 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC17.68■□□□□ 0.42
SIX3O95343 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
SIX3O95343 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC17.68■□□□□ 0.42
SIX3O95343 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC17.67■□□□□ 0.42
SIX3O95343 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC17.67■□□□□ 0.42
SIX3O95343 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SIX3O95343 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SIX3O95343 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms