Protein–RNA interactions for Protein: O94913

PCF11, Pre-mRNA cleavage complex 2 protein Pcf11, humanhuman

Known RBP Predictions only

Length 1,555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11O94913 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC28.05■■■□□ 2.08
PCF11O94913 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC28.05■■■□□ 2.08
PCF11O94913 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
PCF11O94913 AD001527.2-201ENST00000622994 785 ntBASIC28.05■■■□□ 2.08
PCF11O94913 AC107918.4-202ENST00000641623 219 ntBASIC28.05■■■□□ 2.08
PCF11O94913 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC28.05■■■□□ 2.08
PCF11O94913 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC28.05■■■□□ 2.08
PCF11O94913 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
PCF11O94913 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC28.05■■■□□ 2.08
PCF11O94913 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC28.05■■■□□ 2.08
PCF11O94913 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC28.05■■■□□ 2.08
PCF11O94913 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
PCF11O94913 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
PCF11O94913 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC28.04■■■□□ 2.08
PCF11O94913 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
PCF11O94913 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
PCF11O94913 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC28.04■■■□□ 2.08
PCF11O94913 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC28.04■■■□□ 2.08
PCF11O94913 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC28.04■■■□□ 2.08
PCF11O94913 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC28.04■■■□□ 2.08
PCF11O94913 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
PCF11O94913 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC28.04■■■□□ 2.08
PCF11O94913 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
PCF11O94913 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC28.04■■■□□ 2.08
PCF11O94913 SIGLEC16-201ENST00000599858 1437 ntBASIC28.04■■■□□ 2.08
PCF11O94913 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC28.04■■■□□ 2.08
PCF11O94913 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
PCF11O94913 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC28.04■■■□□ 2.08
PCF11O94913 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC28.04■■■□□ 2.08
PCF11O94913 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
PCF11O94913 ADM-208ENST00000534464 1640 ntTSL 2 BASIC28.04■■■□□ 2.08
PCF11O94913 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
PCF11O94913 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC28.04■■■□□ 2.08
PCF11O94913 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
PCF11O94913 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC28.03■■■□□ 2.08
PCF11O94913 KRT18P27-201ENST00000427733 1299 ntBASIC28.03■■■□□ 2.08
PCF11O94913 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC28.03■■■□□ 2.08
PCF11O94913 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC28.03■■■□□ 2.08
PCF11O94913 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC28.03■■■□□ 2.08
PCF11O94913 AC122714.2-201ENST00000502787 707 ntBASIC28.03■■■□□ 2.08
PCF11O94913 CD63-204ENST00000546939 779 ntTSL 3 BASIC28.03■■■□□ 2.08
PCF11O94913 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC28.03■■■□□ 2.08
PCF11O94913 PIN1-206ENST00000587625 878 ntTSL 2 BASIC28.03■■■□□ 2.08
PCF11O94913 SDCCAG3P1-201ENST00000589292 1150 ntBASIC28.03■■■□□ 2.08
PCF11O94913 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC28.03■■■□□ 2.08
PCF11O94913 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC28.03■■■□□ 2.08
PCF11O94913 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC28.03■■■□□ 2.08
PCF11O94913 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
PCF11O94913 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
PCF11O94913 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC28.03■■■□□ 2.08
PCF11O94913 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC28.03■■■□□ 2.08
PCF11O94913 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC28.03■■■□□ 2.08
PCF11O94913 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC28.03■■■□□ 2.08
PCF11O94913 NKAPP1-205ENST00000585790 367 ntBASIC28.03■■■□□ 2.08
PCF11O94913 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC28.03■■■□□ 2.08
PCF11O94913 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
PCF11O94913 AC100803.2-201ENST00000562459 1963 ntBASIC28.02■■■□□ 2.08
PCF11O94913 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC28.02■■■□□ 2.08
PCF11O94913 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC28.02■■■□□ 2.08
PCF11O94913 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
PCF11O94913 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC28.02■■■□□ 2.08
PCF11O94913 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC28.02■■■□□ 2.08
PCF11O94913 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC28.02■■■□□ 2.08
PCF11O94913 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC28.02■■■□□ 2.08
PCF11O94913 MED29-202ENST00000594368 1471 ntTSL 2 BASIC28.02■■■□□ 2.08
PCF11O94913 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC28.02■■■□□ 2.08
PCF11O94913 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
PCF11O94913 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
PCF11O94913 BX005266.1-201ENST00000473402 457 ntBASIC28.02■■■□□ 2.08
PCF11O94913 AC092910.1-201ENST00000482027 1129 ntBASIC28.02■■■□□ 2.08
PCF11O94913 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC28.02■■■□□ 2.08
PCF11O94913 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC28.02■■■□□ 2.08
PCF11O94913 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC28.02■■■□□ 2.08
PCF11O94913 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
PCF11O94913 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
PCF11O94913 AL096828.2-201ENST00000567259 1965 ntBASIC28.02■■■□□ 2.08
PCF11O94913 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
PCF11O94913 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
PCF11O94913 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
PCF11O94913 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC28.01■■■□□ 2.08
PCF11O94913 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.08
PCF11O94913 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC28.01■■■□□ 2.07
PCF11O94913 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC28.01■■■□□ 2.07
PCF11O94913 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC28.01■■■□□ 2.07
PCF11O94913 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
PCF11O94913 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
PCF11O94913 LAGE3P1-201ENST00000425356 484 ntBASIC28.01■■■□□ 2.07
PCF11O94913 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC28.01■■■□□ 2.07
PCF11O94913 AC093909.1-201ENST00000504731 1122 ntBASIC28.01■■■□□ 2.07
PCF11O94913 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
PCF11O94913 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC28.01■■■□□ 2.07
PCF11O94913 AC010327.4-202ENST00000591484 748 ntBASIC28.01■■■□□ 2.07
PCF11O94913 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC28.01■■■□□ 2.07
PCF11O94913 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC28.01■■■□□ 2.07
PCF11O94913 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC28.01■■■□□ 2.07
PCF11O94913 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC28.01■■■□□ 2.07
PCF11O94913 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
PCF11O94913 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC28.01■■■□□ 2.07
PCF11O94913 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
PCF11O94913 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC28■■■□□ 2.07
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms