Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 AC112777.1-201ENST00000540175 1423 ntBASIC17.27■□□□□ 0.35
PDLIM1O00151 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
PDLIM1O00151 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
PDLIM1O00151 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
PDLIM1O00151 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
PDLIM1O00151 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
PDLIM1O00151 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC17.27■□□□□ 0.35
PDLIM1O00151 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
PDLIM1O00151 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
PDLIM1O00151 ABR-203ENST00000536794 2213 ntTSL 2 BASIC17.27■□□□□ 0.35
PDLIM1O00151 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
PDLIM1O00151 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PDLIM1O00151 FLJ13224-201ENST00000313737 1514 ntBASIC17.26■□□□□ 0.35
PDLIM1O00151 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
PDLIM1O00151 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC17.26■□□□□ 0.35
PDLIM1O00151 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PDLIM1O00151 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.35
PDLIM1O00151 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
PDLIM1O00151 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PDLIM1O00151 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
PDLIM1O00151 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PDLIM1O00151 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PDLIM1O00151 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PDLIM1O00151 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PDLIM1O00151 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PDLIM1O00151 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
PDLIM1O00151 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
PDLIM1O00151 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PDLIM1O00151 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC17.26■□□□□ 0.35
PDLIM1O00151 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC17.26■□□□□ 0.35
PDLIM1O00151 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC17.26■□□□□ 0.35
PDLIM1O00151 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
PDLIM1O00151 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PDLIM1O00151 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC17.26■□□□□ 0.35
PDLIM1O00151 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PDLIM1O00151 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PDLIM1O00151 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC17.26■□□□□ 0.35
PDLIM1O00151 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
PDLIM1O00151 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
PDLIM1O00151 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PDLIM1O00151 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
PDLIM1O00151 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
PDLIM1O00151 OR6D1P-202ENST00000641007 5290 ntBASIC17.26■□□□□ 0.35
PDLIM1O00151 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
PDLIM1O00151 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PDLIM1O00151 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PDLIM1O00151 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
PDLIM1O00151 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
PDLIM1O00151 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PDLIM1O00151 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
PDLIM1O00151 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PDLIM1O00151 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC17.25■□□□□ 0.35
PDLIM1O00151 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC17.25■□□□□ 0.35
PDLIM1O00151 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC17.25■□□□□ 0.35
PDLIM1O00151 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PDLIM1O00151 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PDLIM1O00151 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PDLIM1O00151 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
PDLIM1O00151 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PDLIM1O00151 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
PDLIM1O00151 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PDLIM1O00151 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PDLIM1O00151 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.25■□□□□ 0.35
PDLIM1O00151 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PDLIM1O00151 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PDLIM1O00151 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC17.25■□□□□ 0.35
PDLIM1O00151 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC17.25■□□□□ 0.35
PDLIM1O00151 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.25■□□□□ 0.35
PDLIM1O00151 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PDLIM1O00151 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PDLIM1O00151 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PDLIM1O00151 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
PDLIM1O00151 AC093827.2-201ENST00000512654 315 ntBASIC17.25■□□□□ 0.35
PDLIM1O00151 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PDLIM1O00151 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
PDLIM1O00151 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC17.25■□□□□ 0.35
PDLIM1O00151 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC17.25■□□□□ 0.35
PDLIM1O00151 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC17.25■□□□□ 0.35
PDLIM1O00151 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC17.25■□□□□ 0.35
PDLIM1O00151 AL357033.4-201ENST00000617703 1807 ntBASIC17.25■□□□□ 0.35
PDLIM1O00151 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PDLIM1O00151 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC17.25■□□□□ 0.35
PDLIM1O00151 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC17.25■□□□□ 0.35
PDLIM1O00151 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PDLIM1O00151 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PDLIM1O00151 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PDLIM1O00151 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PDLIM1O00151 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
PDLIM1O00151 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PDLIM1O00151 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PDLIM1O00151 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
PDLIM1O00151 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PDLIM1O00151 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
PDLIM1O00151 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PDLIM1O00151 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
PDLIM1O00151 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
PDLIM1O00151 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
PDLIM1O00151 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PDLIM1O00151 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC17.24■□□□□ 0.35
PDLIM1O00151 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms