Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 CNP-202ENST00000393892 5217 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 RTL10-202ENST00000405640 6785 ntAPPRIS P2 TSL 1 (best) BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 AC099063.4-201ENST00000641099 1602 ntBASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 AC241377.3-202ENST00000626088 1088 ntBASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 AC241585.3-202ENST00000628937 1088 ntBASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 AC245100.8-202ENST00000629247 1058 ntBASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 CACNA1G-219ENST00000507609 6849 ntAPPRIS ALT2 TSL 1 (best) BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 CACNA1G-225ENST00000512389 6837 ntAPPRIS ALT2 TSL 1 (best) BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 STOX2-201ENST00000308497 10458 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 AKAP13-201ENST00000361243 9468 ntAPPRIS P4 TSL 1 (best) BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 LDLRAD4-201ENST00000359446 8486 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 AC093525.10-201ENST00000625130 1569 ntBASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 NLRC3-202ENST00000359128 6401 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC10.05□□□□□ -0.8
CHKB-CPT1BH3BT56 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 SCN8A-202ENST00000355133 5820 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 GUF1-201ENST00000281543 4449 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 PPP1R15B-201ENST00000367188 5227 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 USP39-202ENST00000409025 1946 ntTSL 5 BASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 CLTA-210ENST00000540080 989 ntTSL 2 BASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 pRNA.6-201ENST00000610482 90 ntBASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 pRNA.5-201ENST00000612139 90 ntBASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 BHLHE23-202ENST00000612929 1109 ntBASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 pRNA.11-201ENST00000618423 90 ntBASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 pRNA.13-201ENST00000619112 90 ntBASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 ACSS3-203ENST00000548058 9254 ntAPPRIS P3 TSL 1 (best) BASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 COLGALT1-201ENST00000252599 3704 ntAPPRIS P2 TSL 1 (best) BASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC10.04□□□□□ -0.8
CHKB-CPT1BH3BT56 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC10.04□□□□□ -0.8
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms