Protein–RNA interactions for Protein: A6NIU2

LINC01549, Putative uncharacterized protein encoded by LINC01549, humanhuman

Predictions only

Length 74 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01549A6NIU2 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
LINC01549A6NIU2 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC12.89□□□□□ -0.35
LINC01549A6NIU2 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
LINC01549A6NIU2 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
LINC01549A6NIU2 NME6-213ENST00000451657 871 ntTSL 2 BASIC12.89□□□□□ -0.35
LINC01549A6NIU2 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC12.89□□□□□ -0.35
LINC01549A6NIU2 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
LINC01549A6NIU2 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC12.89□□□□□ -0.35
LINC01549A6NIU2 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC12.89□□□□□ -0.35
LINC01549A6NIU2 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC12.89□□□□□ -0.35
LINC01549A6NIU2 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC12.89□□□□□ -0.35
LINC01549A6NIU2 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
LINC01549A6NIU2 AC006557.6-201ENST00000623071 864 ntBASIC12.89□□□□□ -0.35
LINC01549A6NIU2 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
LINC01549A6NIU2 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
LINC01549A6NIU2 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
LINC01549A6NIU2 AL356309.3-201ENST00000624132 1934 ntBASIC12.89□□□□□ -0.35
LINC01549A6NIU2 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
LINC01549A6NIU2 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
LINC01549A6NIU2 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
LINC01549A6NIU2 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
LINC01549A6NIU2 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
LINC01549A6NIU2 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
LINC01549A6NIU2 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
LINC01549A6NIU2 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
LINC01549A6NIU2 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
LINC01549A6NIU2 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
LINC01549A6NIU2 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
LINC01549A6NIU2 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 AL596257.1-201ENST00000641463 2694 ntBASIC12.88□□□□□ -0.35
LINC01549A6NIU2 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 POU5F1P3-201ENST00000428824 1078 ntBASIC12.88□□□□□ -0.35
LINC01549A6NIU2 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 AC133552.2-202ENST00000575694 574 ntBASIC12.88□□□□□ -0.35
LINC01549A6NIU2 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 AC005837.3-201ENST00000612163 286 ntBASIC12.88□□□□□ -0.35
LINC01549A6NIU2 AC011767.1-201ENST00000617410 1153 ntBASIC12.88□□□□□ -0.35
LINC01549A6NIU2 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 AC133963.1-201ENST00000504166 1679 ntBASIC12.88□□□□□ -0.35
LINC01549A6NIU2 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 KRT8P41-201ENST00000533985 1514 ntBASIC12.88□□□□□ -0.35
LINC01549A6NIU2 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC12.88□□□□□ -0.35
LINC01549A6NIU2 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
LINC01549A6NIU2 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
LINC01549A6NIU2 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
LINC01549A6NIU2 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC12.87□□□□□ -0.35
LINC01549A6NIU2 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
LINC01549A6NIU2 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
LINC01549A6NIU2 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
LINC01549A6NIU2 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC12.87□□□□□ -0.35
LINC01549A6NIU2 PHGDH-209ENST00000641074 1780 ntBASIC12.87□□□□□ -0.35
LINC01549A6NIU2 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC12.87□□□□□ -0.35
LINC01549A6NIU2 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC12.87□□□□□ -0.35
LINC01549A6NIU2 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC12.87□□□□□ -0.35
LINC01549A6NIU2 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
LINC01549A6NIU2 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms