Protein–RNA interactions for Protein: Q9Y6N3

CLCA3P, Calcium-activated chloride channel regulator family member 3, humanhuman

Predictions only

Length 262 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCA3PQ9Y6N3 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CLCA3PQ9Y6N3 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CLCA3PQ9Y6N3 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC23.27■■□□□ 1.32
CLCA3PQ9Y6N3 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CLCA3PQ9Y6N3 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
CLCA3PQ9Y6N3 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC23.27■■□□□ 1.32
CLCA3PQ9Y6N3 GPX1-201ENST00000419349 1106 ntBASIC23.27■■□□□ 1.32
CLCA3PQ9Y6N3 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC23.27■■□□□ 1.32
CLCA3PQ9Y6N3 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
CLCA3PQ9Y6N3 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC23.26■■□□□ 1.31
CLCA3PQ9Y6N3 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CLCA3PQ9Y6N3 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC23.26■■□□□ 1.31
CLCA3PQ9Y6N3 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC23.26■■□□□ 1.31
CLCA3PQ9Y6N3 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC23.26■■□□□ 1.31
CLCA3PQ9Y6N3 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC23.26■■□□□ 1.31
CLCA3PQ9Y6N3 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
CLCA3PQ9Y6N3 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
CLCA3PQ9Y6N3 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC23.25■■□□□ 1.31
CLCA3PQ9Y6N3 AL359258.2-201ENST00000564063 1566 ntBASIC23.25■■□□□ 1.31
CLCA3PQ9Y6N3 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CLCA3PQ9Y6N3 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CLCA3PQ9Y6N3 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
CLCA3PQ9Y6N3 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CLCA3PQ9Y6N3 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CLCA3PQ9Y6N3 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CLCA3PQ9Y6N3 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
CLCA3PQ9Y6N3 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC23.24■■□□□ 1.31
CLCA3PQ9Y6N3 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC23.23■■□□□ 1.31
CLCA3PQ9Y6N3 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
CLCA3PQ9Y6N3 AC060814.1-201ENST00000554326 538 ntBASIC23.23■■□□□ 1.31
CLCA3PQ9Y6N3 HSD17B1P1-201ENST00000590052 955 ntBASIC23.23■■□□□ 1.31
CLCA3PQ9Y6N3 MED25-210ENST00000612854 801 ntTSL 5 BASIC23.23■■□□□ 1.31
CLCA3PQ9Y6N3 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
CLCA3PQ9Y6N3 MED25-214ENST00000622402 642 ntTSL 5 BASIC23.23■■□□□ 1.31
CLCA3PQ9Y6N3 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CLCA3PQ9Y6N3 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC23.23■■□□□ 1.31
CLCA3PQ9Y6N3 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC23.22■■□□□ 1.31
CLCA3PQ9Y6N3 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CLCA3PQ9Y6N3 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CLCA3PQ9Y6N3 HES4-202ENST00000428771 1040 ntTSL 2 BASIC23.21■■□□□ 1.31
CLCA3PQ9Y6N3 WHAMMP3-201ENST00000611636 1609 ntBASIC23.21■■□□□ 1.31
CLCA3PQ9Y6N3 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC23.2■■□□□ 1.3
CLCA3PQ9Y6N3 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
CLCA3PQ9Y6N3 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC23.2■■□□□ 1.3
CLCA3PQ9Y6N3 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CLCA3PQ9Y6N3 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CLCA3PQ9Y6N3 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC23.19■■□□□ 1.3
CLCA3PQ9Y6N3 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CLCA3PQ9Y6N3 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC23.19■■□□□ 1.3
CLCA3PQ9Y6N3 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CLCA3PQ9Y6N3 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
CLCA3PQ9Y6N3 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC23.17■■□□□ 1.3
CLCA3PQ9Y6N3 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CLCA3PQ9Y6N3 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
CLCA3PQ9Y6N3 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CLCA3PQ9Y6N3 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC23.16■■□□□ 1.3
CLCA3PQ9Y6N3 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
CLCA3PQ9Y6N3 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CLCA3PQ9Y6N3 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CLCA3PQ9Y6N3 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CLCA3PQ9Y6N3 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC23.15■■□□□ 1.3
CLCA3PQ9Y6N3 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
CLCA3PQ9Y6N3 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CLCA3PQ9Y6N3 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC23.15■■□□□ 1.3
CLCA3PQ9Y6N3 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CLCA3PQ9Y6N3 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
CLCA3PQ9Y6N3 RNF126P1-201ENST00000567452 1320 ntBASIC23.14■■□□□ 1.3
CLCA3PQ9Y6N3 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC23.14■■□□□ 1.29
CLCA3PQ9Y6N3 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
CLCA3PQ9Y6N3 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
CLCA3PQ9Y6N3 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
CLCA3PQ9Y6N3 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.29
CLCA3PQ9Y6N3 SHF-208ENST00000560734 1731 ntTSL 3 BASIC23.13■■□□□ 1.29
CLCA3PQ9Y6N3 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CLCA3PQ9Y6N3 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CLCA3PQ9Y6N3 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CLCA3PQ9Y6N3 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC23.13■■□□□ 1.29
CLCA3PQ9Y6N3 BRD4-212ENST00000630599 726 ntTSL 2 BASIC23.12■■□□□ 1.29
CLCA3PQ9Y6N3 AC092296.2-201ENST00000589470 999 ntBASIC23.11■■□□□ 1.29
CLCA3PQ9Y6N3 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC23.11■■□□□ 1.29
CLCA3PQ9Y6N3 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
CLCA3PQ9Y6N3 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
CLCA3PQ9Y6N3 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CLCA3PQ9Y6N3 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
CLCA3PQ9Y6N3 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC23.1■■□□□ 1.29
CLCA3PQ9Y6N3 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC23.1■■□□□ 1.29
CLCA3PQ9Y6N3 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CLCA3PQ9Y6N3 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CLCA3PQ9Y6N3 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CLCA3PQ9Y6N3 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC23.09■■□□□ 1.29
CLCA3PQ9Y6N3 AL449106.1-201ENST00000608517 1980 ntBASIC23.09■■□□□ 1.29
CLCA3PQ9Y6N3 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CLCA3PQ9Y6N3 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
CLCA3PQ9Y6N3 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CLCA3PQ9Y6N3 ECEL1P2-201ENST00000461596 1295 ntBASIC23.08■■□□□ 1.29
CLCA3PQ9Y6N3 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CLCA3PQ9Y6N3 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CLCA3PQ9Y6N3 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC23.07■■□□□ 1.28
CLCA3PQ9Y6N3 RARRES2P2-201ENST00000394842 485 ntBASIC23.07■■□□□ 1.28
CLCA3PQ9Y6N3 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC23.07■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 11.3 ms