Protein–RNA interactions for Protein: Q9NUP9

LIN7C, Protein lin-7 homolog C, humanhuman

Known RBP Predictions only

Length 197 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN7CQ9NUP9 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
LIN7CQ9NUP9 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC20.4■□□□□ 0.86
LIN7CQ9NUP9 AC135731.1-201ENST00000569415 2548 ntBASIC20.4■□□□□ 0.86
LIN7CQ9NUP9 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
LIN7CQ9NUP9 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
LIN7CQ9NUP9 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
LIN7CQ9NUP9 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC20.39■□□□□ 0.85
LIN7CQ9NUP9 DUX4L11-201ENST00000611504 1267 ntBASIC20.39■□□□□ 0.85
LIN7CQ9NUP9 DUX4L12-201ENST00000614593 1267 ntBASIC20.39■□□□□ 0.85
LIN7CQ9NUP9 DUX4L14-201ENST00000621227 1267 ntBASIC20.39■□□□□ 0.85
LIN7CQ9NUP9 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
LIN7CQ9NUP9 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
LIN7CQ9NUP9 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
LIN7CQ9NUP9 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LIN7CQ9NUP9 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
LIN7CQ9NUP9 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC20.38■□□□□ 0.85
LIN7CQ9NUP9 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LIN7CQ9NUP9 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LIN7CQ9NUP9 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
LIN7CQ9NUP9 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
LIN7CQ9NUP9 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC20.37■□□□□ 0.85
LIN7CQ9NUP9 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
LIN7CQ9NUP9 AGPS-202ENST00000409888 815 ntTSL 4 BASIC20.36■□□□□ 0.85
LIN7CQ9NUP9 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC20.36■□□□□ 0.85
LIN7CQ9NUP9 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC20.36■□□□□ 0.85
LIN7CQ9NUP9 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
LIN7CQ9NUP9 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LIN7CQ9NUP9 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LIN7CQ9NUP9 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LIN7CQ9NUP9 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC20.35■□□□□ 0.85
LIN7CQ9NUP9 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LIN7CQ9NUP9 AP004609.3-201ENST00000610705 1884 ntBASIC20.35■□□□□ 0.85
LIN7CQ9NUP9 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC20.34■□□□□ 0.85
LIN7CQ9NUP9 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC20.34■□□□□ 0.85
LIN7CQ9NUP9 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
LIN7CQ9NUP9 DUX4L13-201ENST00000554103 1267 ntBASIC20.34■□□□□ 0.85
LIN7CQ9NUP9 RNF166-209ENST00000567844 633 ntTSL 5 BASIC20.34■□□□□ 0.85
LIN7CQ9NUP9 DUX4L15-201ENST00000611059 1267 ntBASIC20.34■□□□□ 0.85
LIN7CQ9NUP9 DUX4L23-201ENST00000615195 1269 ntBASIC20.34■□□□□ 0.85
LIN7CQ9NUP9 DUX4L24-201ENST00000617576 1269 ntBASIC20.34■□□□□ 0.85
LIN7CQ9NUP9 DUX4L22-201ENST00000618238 1269 ntBASIC20.34■□□□□ 0.85
LIN7CQ9NUP9 DUX4L20-201ENST00000619712 1269 ntBASIC20.34■□□□□ 0.85
LIN7CQ9NUP9 DUX4L21-201ENST00000622058 1269 ntBASIC20.34■□□□□ 0.85
LIN7CQ9NUP9 DUX4L10-201ENST00000622460 1267 ntBASIC20.34■□□□□ 0.85
LIN7CQ9NUP9 DUX4L25-201ENST00000624915 1269 ntBASIC20.34■□□□□ 0.85
LIN7CQ9NUP9 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIN7CQ9NUP9 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC20.34■□□□□ 0.85
LIN7CQ9NUP9 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
LIN7CQ9NUP9 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC20.33■□□□□ 0.85
LIN7CQ9NUP9 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LIN7CQ9NUP9 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LIN7CQ9NUP9 CHML-204ENST00000638121 920 ntTSL 2 BASIC20.33■□□□□ 0.85
LIN7CQ9NUP9 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
LIN7CQ9NUP9 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LIN7CQ9NUP9 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LIN7CQ9NUP9 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LIN7CQ9NUP9 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC20.32■□□□□ 0.84
LIN7CQ9NUP9 MACF1-219ENST00000484793 834 ntTSL 2 BASIC20.32■□□□□ 0.84
LIN7CQ9NUP9 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
LIN7CQ9NUP9 AC092803.2-201ENST00000564287 1899 ntBASIC20.32■□□□□ 0.84
LIN7CQ9NUP9 DUSP8P4-201ENST00000399538 1761 ntBASIC20.31■□□□□ 0.84
LIN7CQ9NUP9 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIN7CQ9NUP9 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LIN7CQ9NUP9 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC20.31■□□□□ 0.84
LIN7CQ9NUP9 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LIN7CQ9NUP9 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIN7CQ9NUP9 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIN7CQ9NUP9 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC20.3■□□□□ 0.84
LIN7CQ9NUP9 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIN7CQ9NUP9 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIN7CQ9NUP9 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
LIN7CQ9NUP9 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIN7CQ9NUP9 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC20.29■□□□□ 0.84
LIN7CQ9NUP9 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIN7CQ9NUP9 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC20.29■□□□□ 0.84
LIN7CQ9NUP9 PVT1-219ENST00000523427 938 ntTSL 3 BASIC20.29■□□□□ 0.84
LIN7CQ9NUP9 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC20.29■□□□□ 0.84
LIN7CQ9NUP9 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC20.28■□□□□ 0.84
LIN7CQ9NUP9 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC20.28■□□□□ 0.84
LIN7CQ9NUP9 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
LIN7CQ9NUP9 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LIN7CQ9NUP9 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LIN7CQ9NUP9 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC20.28■□□□□ 0.84
LIN7CQ9NUP9 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LIN7CQ9NUP9 AC020928.2-201ENST00000588717 2197 ntBASIC20.27■□□□□ 0.84
LIN7CQ9NUP9 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIN7CQ9NUP9 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
LIN7CQ9NUP9 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIN7CQ9NUP9 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC20.27■□□□□ 0.84
LIN7CQ9NUP9 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
LIN7CQ9NUP9 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIN7CQ9NUP9 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
LIN7CQ9NUP9 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
LIN7CQ9NUP9 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
LIN7CQ9NUP9 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LIN7CQ9NUP9 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LIN7CQ9NUP9 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LIN7CQ9NUP9 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
LIN7CQ9NUP9 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIN7CQ9NUP9 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms