Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CLHC1Q8NHS4 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CLHC1Q8NHS4 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
CLHC1Q8NHS4 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC23.59■■□□□ 1.37
CLHC1Q8NHS4 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
CLHC1Q8NHS4 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CLHC1Q8NHS4 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC23.58■■□□□ 1.37
CLHC1Q8NHS4 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC23.58■■□□□ 1.37
CLHC1Q8NHS4 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC23.58■■□□□ 1.37
CLHC1Q8NHS4 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
CLHC1Q8NHS4 AC142472.1-201ENST00000612013 1741 ntBASIC23.58■■□□□ 1.37
CLHC1Q8NHS4 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC23.58■■□□□ 1.36
CLHC1Q8NHS4 AC145676.1-201ENST00000514988 2004 ntBASIC23.57■■□□□ 1.36
CLHC1Q8NHS4 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC23.57■■□□□ 1.36
CLHC1Q8NHS4 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC23.57■■□□□ 1.36
CLHC1Q8NHS4 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC23.57■■□□□ 1.36
CLHC1Q8NHS4 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC23.57■■□□□ 1.36
CLHC1Q8NHS4 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
CLHC1Q8NHS4 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC23.56■■□□□ 1.36
CLHC1Q8NHS4 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
CLHC1Q8NHS4 CHST11-202ENST00000546689 756 ntTSL 2 BASIC23.56■■□□□ 1.36
CLHC1Q8NHS4 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC23.55■■□□□ 1.36
CLHC1Q8NHS4 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CLHC1Q8NHS4 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC23.55■■□□□ 1.36
CLHC1Q8NHS4 AC092803.2-201ENST00000564287 1899 ntBASIC23.55■■□□□ 1.36
CLHC1Q8NHS4 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CLHC1Q8NHS4 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CLHC1Q8NHS4 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
CLHC1Q8NHS4 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
CLHC1Q8NHS4 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC23.54■■□□□ 1.36
CLHC1Q8NHS4 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
CLHC1Q8NHS4 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
CLHC1Q8NHS4 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CLHC1Q8NHS4 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
CLHC1Q8NHS4 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CLHC1Q8NHS4 DUX4L13-201ENST00000554103 1267 ntBASIC23.54■■□□□ 1.36
CLHC1Q8NHS4 DUX4L15-201ENST00000611059 1267 ntBASIC23.54■■□□□ 1.36
CLHC1Q8NHS4 DUX4L23-201ENST00000615195 1269 ntBASIC23.54■■□□□ 1.36
CLHC1Q8NHS4 DUX4L24-201ENST00000617576 1269 ntBASIC23.54■■□□□ 1.36
CLHC1Q8NHS4 DUX4L22-201ENST00000618238 1269 ntBASIC23.54■■□□□ 1.36
CLHC1Q8NHS4 DUX4L20-201ENST00000619712 1269 ntBASIC23.54■■□□□ 1.36
CLHC1Q8NHS4 DUX4L21-201ENST00000622058 1269 ntBASIC23.54■■□□□ 1.36
CLHC1Q8NHS4 DUX4L10-201ENST00000622460 1267 ntBASIC23.54■■□□□ 1.36
CLHC1Q8NHS4 DUX4L25-201ENST00000624915 1269 ntBASIC23.54■■□□□ 1.36
CLHC1Q8NHS4 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CLHC1Q8NHS4 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CLHC1Q8NHS4 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC23.53■■□□□ 1.36
CLHC1Q8NHS4 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
CLHC1Q8NHS4 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC23.53■■□□□ 1.36
CLHC1Q8NHS4 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
CLHC1Q8NHS4 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC23.52■■□□□ 1.36
CLHC1Q8NHS4 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
CLHC1Q8NHS4 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC23.52■■□□□ 1.36
CLHC1Q8NHS4 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
CLHC1Q8NHS4 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC23.52■■□□□ 1.36
CLHC1Q8NHS4 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC23.52■■□□□ 1.36
CLHC1Q8NHS4 AC135731.1-201ENST00000569415 2548 ntBASIC23.52■■□□□ 1.35
CLHC1Q8NHS4 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CLHC1Q8NHS4 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CLHC1Q8NHS4 DUX4L11-201ENST00000611504 1267 ntBASIC23.51■■□□□ 1.35
CLHC1Q8NHS4 DUX4L12-201ENST00000614593 1267 ntBASIC23.51■■□□□ 1.35
CLHC1Q8NHS4 DUX4L14-201ENST00000621227 1267 ntBASIC23.51■■□□□ 1.35
CLHC1Q8NHS4 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC23.51■■□□□ 1.35
CLHC1Q8NHS4 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
CLHC1Q8NHS4 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
CLHC1Q8NHS4 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
CLHC1Q8NHS4 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC23.5■■□□□ 1.35
CLHC1Q8NHS4 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC23.5■■□□□ 1.35
CLHC1Q8NHS4 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC23.5■■□□□ 1.35
CLHC1Q8NHS4 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
CLHC1Q8NHS4 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
CLHC1Q8NHS4 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
CLHC1Q8NHS4 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC23.49■■□□□ 1.35
CLHC1Q8NHS4 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC23.49■■□□□ 1.35
CLHC1Q8NHS4 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
CLHC1Q8NHS4 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
CLHC1Q8NHS4 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC23.49■■□□□ 1.35
CLHC1Q8NHS4 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC23.49■■□□□ 1.35
CLHC1Q8NHS4 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC23.49■■□□□ 1.35
CLHC1Q8NHS4 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
CLHC1Q8NHS4 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CLHC1Q8NHS4 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC23.48■■□□□ 1.35
CLHC1Q8NHS4 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC23.48■■□□□ 1.35
CLHC1Q8NHS4 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC23.48■■□□□ 1.35
CLHC1Q8NHS4 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CLHC1Q8NHS4 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CLHC1Q8NHS4 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
CLHC1Q8NHS4 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
CLHC1Q8NHS4 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CLHC1Q8NHS4 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC23.47■■□□□ 1.35
CLHC1Q8NHS4 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC23.47■■□□□ 1.35
CLHC1Q8NHS4 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.47■■□□□ 1.35
CLHC1Q8NHS4 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CLHC1Q8NHS4 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC23.47■■□□□ 1.35
CLHC1Q8NHS4 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CLHC1Q8NHS4 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC23.46■■□□□ 1.35
CLHC1Q8NHS4 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
CLHC1Q8NHS4 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
CLHC1Q8NHS4 DUSP8P4-201ENST00000399538 1761 ntBASIC23.46■■□□□ 1.35
CLHC1Q8NHS4 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC23.46■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 63.6 ms