Protein–RNA interactions for Protein: P34223

SHP1, UBX domain-containing protein 1, yeastyeast

Predictions only

Length 423 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SHP1P34223 YMR122CYMR122C 375 nt7.47□□□□□ -1.21
SHP1P34223 GPD2YOL059W 1323 nt7.47□□□□□ -1.21
SHP1P34223 TFG2YGR005C 1203 nt7.46□□□□□ -1.22
SHP1P34223 EXG2YDR261C 1689 nt7.45□□□□□ -1.22
SHP1P34223 PTC7YHR076W 1032 nt7.45□□□□□ -1.22
SHP1P34223 TDH2YJR009C 999 nt7.45□□□□□ -1.22
SHP1P34223 MHT1YLL062C 975 nt7.45□□□□□ -1.22
SHP1P34223 CUE4YML101C 354 nt7.45□□□□□ -1.22
SHP1P34223 YOR041CYOR041C 432 nt7.45□□□□□ -1.22
SHP1P34223 TAE1YBR261C 699 nt7.45□□□□□ -1.22
SHP1P34223 PFS2YNL317W 1398 nt7.45□□□□□ -1.22
SHP1P34223 FCP1YMR277W 2199 nt7.44□□□□□ -1.22
SHP1P34223 DOT1YDR440W 1749 nt7.44□□□□□ -1.22
SHP1P34223 DLD1YDL174C 1764 nt7.44□□□□□ -1.22
SHP1P34223 FSF1YOR271C 984 nt7.44□□□□□ -1.22
SHP1P34223 YBR027CYBR027C 333 nt7.44□□□□□ -1.22
SHP1P34223 GCD11YER025W 1584 nt7.44□□□□□ -1.22
SHP1P34223 HSV2YGR223C 1347 nt7.44□□□□□ -1.22
SHP1P34223 PUS7YOR243C 2031 nt7.44□□□□□ -1.22
SHP1P34223 MHP1YJL042W 4197 nt7.43□□□□□ -1.22
SHP1P34223 CUP2YGL166W 678 nt7.43□□□□□ -1.22
SHP1P34223 MSP1YGR028W 1089 nt7.43□□□□□ -1.22
SHP1P34223 RPL31BYLR406C 342 nt7.43□□□□□ -1.22
SHP1P34223 CDC23YHR166C 1881 nt7.43□□□□□ -1.22
SHP1P34223 MET30YIL046W 1923 nt7.42□□□□□ -1.22
SHP1P34223 RNH1YMR234W 1047 nt7.42□□□□□ -1.22
SHP1P34223 FLC2YAL053W 2352 nt7.42□□□□□ -1.22
SHP1P34223 MRPL23YOR150W 492 nt7.41□□□□□ -1.22
SHP1P34223 YPR127WYPR127W 1038 nt7.41□□□□□ -1.22
SHP1P34223 MSG5YNL053W 1470 nt7.41□□□□□ -1.22
SHP1P34223 SWD1YAR003W 1281 nt7.4□□□□□ -1.22
SHP1P34223 YMR295CYMR295C 594 nt7.4□□□□□ -1.22
SHP1P34223 MAL31YBR298C 1845 nt7.4□□□□□ -1.23
SHP1P34223 NUP57YGR119C 1626 nt7.39□□□□□ -1.23
SHP1P34223 VMA3YEL027W 483 nt7.39□□□□□ -1.23
SHP1P34223 YKL018C-AYKL018C-A 300 nt7.39□□□□□ -1.23
SHP1P34223 FCY2YER056C 1602 nt7.38□□□□□ -1.23
SHP1P34223 RNH201YNL072W 924 nt7.38□□□□□ -1.23
SHP1P34223 ECM10YEL030W 1935 nt7.38□□□□□ -1.23
SHP1P34223 YNL190WYNL190W 615 nt7.37□□□□□ -1.23
SHP1P34223 HXT9YJL219W 1704 nt7.37□□□□□ -1.23
SHP1P34223 HED1YDR014W-A 489 nt7.36□□□□□ -1.23
SHP1P34223 IRC5YFR038W 2562 nt7.36□□□□□ -1.23
SHP1P34223 PRE3YJL001W 648 nt7.35□□□□□ -1.23
SHP1P34223 ZWF1YNL241C 1518 nt7.35□□□□□ -1.23
SHP1P34223 UIP5YKR044W 1332 nt7.33□□□□□ -1.24
SHP1P34223 MPC2YHR162W 390 nt7.33□□□□□ -1.24
SHP1P34223 CBR1YIL043C 855 nt7.33□□□□□ -1.24
SHP1P34223 YNL097W-AYNL097W-A 156 nt7.33□□□□□ -1.24
SHP1P34223 MRPL10YNL284C 969 nt7.33□□□□□ -1.24
SHP1P34223 COQ3YOL096C 939 nt7.33□□□□□ -1.24
SHP1P34223 SGF29YCL010C 780 nt7.33□□□□□ -1.24
SHP1P34223 YRF1-1YDR545W 5391 nt7.33□□□□□ -1.24
SHP1P34223 YRF1-5YLR467W 5391 nt7.33□□□□□ -1.24
SHP1P34223 YRF1-8YOR396W 5391 nt7.33□□□□□ -1.24
SHP1P34223 YHL018WYHL018W 363 nt7.32□□□□□ -1.24
SHP1P34223 MIX17YMR002W 471 nt7.32□□□□□ -1.24
SHP1P34223 TDP1YBR223C 1635 nt7.31□□□□□ -1.24
SHP1P34223 YRB2YIL063C 984 nt7.31□□□□□ -1.24
SHP1P34223 YOR200WYOR200W 399 nt7.31□□□□□ -1.24
SHP1P34223 ADH5YBR145W 1056 nt7.31□□□□□ -1.24
SHP1P34223 TRS31YDR472W 852 nt7.3□□□□□ -1.24
SHP1P34223 TMA46YOR091W 1038 nt7.3□□□□□ -1.24
SHP1P34223 CCT8YJL008C 1707 nt7.3□□□□□ -1.24
SHP1P34223 LYS21YDL131W 1323 nt7.29□□□□□ -1.24
SHP1P34223 NUP84YDL116W 2181 nt7.29□□□□□ -1.24
SHP1P34223 YPL264CYPL264C 1062 nt7.29□□□□□ -1.24
SHP1P34223 LAS17YOR181W 1902 nt7.29□□□□□ -1.24
SHP1P34223 COQ1YBR003W 1422 nt7.28□□□□□ -1.24
SHP1P34223 YPR196WYPR196W 1413 nt7.28□□□□□ -1.24
SHP1P34223 PPH22YDL188C 1134 nt7.28□□□□□ -1.24
SHP1P34223 URH1YDR400W 1023 nt7.28□□□□□ -1.24
SHP1P34223 NAS6YGR232W 687 nt7.28□□□□□ -1.24
SHP1P34223 YHR213W-BYHR213W-B 300 nt7.28□□□□□ -1.24
SHP1P34223 YLR157W-EYLR157W-E 165 nt7.28□□□□□ -1.24
SHP1P34223 YAR064WYAR064W 300 nt7.28□□□□□ -1.24
SHP1P34223 RPS28AYOR167C 204 nt7.28□□□□□ -1.24
SHP1P34223 ENB1YOL158C 1821 nt7.28□□□□□ -1.24
SHP1P34223 RMD8YFR048W 1989 nt7.28□□□□□ -1.24
SHP1P34223 DSF1YEL070W 1509 nt7.27□□□□□ -1.25
SHP1P34223 YNR073CYNR073C 1509 nt7.27□□□□□ -1.25
SHP1P34223 YSC83YHR017W 1158 nt7.27□□□□□ -1.25
SHP1P34223 NDE1YMR145C 1683 nt7.27□□□□□ -1.25
SHP1P34223 BEM1YBR200W 1656 nt7.27□□□□□ -1.25
SHP1P34223 CAN1YEL063C 1773 nt7.27□□□□□ -1.25
SHP1P34223 YHK8YHR048W 1545 nt7.27□□□□□ -1.25
SHP1P34223 ZRT2YLR130C 1269 nt7.26□□□□□ -1.25
SHP1P34223 CTF19YPL018W 1110 nt7.26□□□□□ -1.25
SHP1P34223 YKR018CYKR018C 2178 nt7.26□□□□□ -1.25
SHP1P34223 YMR034CYMR034C 1305 nt7.26□□□□□ -1.25
SHP1P34223 FRT1YOR324C 1809 nt7.25□□□□□ -1.25
SHP1P34223 VPS24YKL041W 675 nt7.25□□□□□ -1.25
SHP1P34223 DID2YKR035W-A 615 nt7.25□□□□□ -1.25
SHP1P34223 YMR279CYMR279C 1623 nt7.25□□□□□ -1.25
SHP1P34223 LOT6YLR011W 576 nt7.24□□□□□ -1.25
SHP1P34223 MSO1YNR049C 633 nt7.24□□□□□ -1.25
SHP1P34223 UIP4YPL186C 915 nt7.24□□□□□ -1.25
SHP1P34223 YHR020WYHR020W 2067 nt7.24□□□□□ -1.25
SHP1P34223 SNU66YOR308C 1764 nt7.23□□□□□ -1.25
SHP1P34223 SEC24YIL109C 2781 nt7.23□□□□□ -1.25
Retrieved 100 of 7,029 protein–RNA pairs in 10.6 ms