Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC17.57■□□□□ 0.4
VPS4AQ9UN37 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.57■□□□□ 0.4
VPS4AQ9UN37 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS4AQ9UN37 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.57■□□□□ 0.4
VPS4AQ9UN37 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
VPS4AQ9UN37 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS4AQ9UN37 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VPS4AQ9UN37 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC17.57■□□□□ 0.4
VPS4AQ9UN37 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
VPS4AQ9UN37 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC17.57■□□□□ 0.4
VPS4AQ9UN37 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VPS4AQ9UN37 VENTXP5-201ENST00000523979 775 ntBASIC17.57■□□□□ 0.4
VPS4AQ9UN37 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
VPS4AQ9UN37 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
VPS4AQ9UN37 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC17.57■□□□□ 0.4
VPS4AQ9UN37 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS4AQ9UN37 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS4AQ9UN37 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.57■□□□□ 0.4
VPS4AQ9UN37 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC17.57■□□□□ 0.4
VPS4AQ9UN37 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VPS4AQ9UN37 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS4AQ9UN37 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC17.56■□□□□ 0.4
VPS4AQ9UN37 AC092338.2-201ENST00000568827 1415 ntBASIC17.56■□□□□ 0.4
VPS4AQ9UN37 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC17.56■□□□□ 0.4
VPS4AQ9UN37 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
VPS4AQ9UN37 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS4AQ9UN37 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VPS4AQ9UN37 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC17.56■□□□□ 0.4
VPS4AQ9UN37 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS4AQ9UN37 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.56■□□□□ 0.4
VPS4AQ9UN37 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS4AQ9UN37 ENSA-205ENST00000361532 792 ntTSL 2 BASIC17.56■□□□□ 0.4
VPS4AQ9UN37 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC17.56■□□□□ 0.4
VPS4AQ9UN37 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS4AQ9UN37 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
VPS4AQ9UN37 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC17.56■□□□□ 0.4
VPS4AQ9UN37 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC17.56■□□□□ 0.4
VPS4AQ9UN37 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VPS4AQ9UN37 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC17.56■□□□□ 0.4
VPS4AQ9UN37 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
VPS4AQ9UN37 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VPS4AQ9UN37 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VPS4AQ9UN37 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS4AQ9UN37 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS4AQ9UN37 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC17.56■□□□□ 0.4
VPS4AQ9UN37 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS4AQ9UN37 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS4AQ9UN37 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC17.56■□□□□ 0.4
VPS4AQ9UN37 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
VPS4AQ9UN37 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.56■□□□□ 0.4
VPS4AQ9UN37 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS4AQ9UN37 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
VPS4AQ9UN37 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS4AQ9UN37 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
VPS4AQ9UN37 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC17.55■□□□□ 0.4
VPS4AQ9UN37 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VPS4AQ9UN37 MYLKP1-201ENST00000509077 1580 ntBASIC17.55■□□□□ 0.4
VPS4AQ9UN37 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS4AQ9UN37 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
VPS4AQ9UN37 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS4AQ9UN37 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC17.55■□□□□ 0.4
VPS4AQ9UN37 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS4AQ9UN37 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS4AQ9UN37 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC17.55■□□□□ 0.4
VPS4AQ9UN37 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC17.55■□□□□ 0.4
VPS4AQ9UN37 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC17.55■□□□□ 0.4
VPS4AQ9UN37 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VPS4AQ9UN37 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC17.55■□□□□ 0.4
VPS4AQ9UN37 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS4AQ9UN37 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS4AQ9UN37 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.55■□□□□ 0.4
VPS4AQ9UN37 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC17.55■□□□□ 0.4
VPS4AQ9UN37 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC17.55■□□□□ 0.4
VPS4AQ9UN37 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.55■□□□□ 0.4
VPS4AQ9UN37 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VPS4AQ9UN37 AL109659.2-201ENST00000606809 1674 ntBASIC17.55■□□□□ 0.4
VPS4AQ9UN37 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS4AQ9UN37 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VPS4AQ9UN37 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS4AQ9UN37 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS4AQ9UN37 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC17.54■□□□□ 0.4
VPS4AQ9UN37 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
VPS4AQ9UN37 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS4AQ9UN37 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VPS4AQ9UN37 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC17.54■□□□□ 0.4
VPS4AQ9UN37 PKD1P1-201ENST00000458669 6805 ntBASIC17.54■□□□□ 0.4
VPS4AQ9UN37 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS4AQ9UN37 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS4AQ9UN37 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS4AQ9UN37 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS4AQ9UN37 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS4AQ9UN37 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS4AQ9UN37 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC17.54■□□□□ 0.4
VPS4AQ9UN37 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC17.54■□□□□ 0.4
VPS4AQ9UN37 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC17.54■□□□□ 0.4
VPS4AQ9UN37 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS4AQ9UN37 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS4AQ9UN37 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.54■□□□□ 0.4
VPS4AQ9UN37 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
VPS4AQ9UN37 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms