Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AC093484.2-201ENST00000580996 2166 ntBASIC18.86■□□□□ 0.61
LIMD1Q9UGP4 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIMD1Q9UGP4 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIMD1Q9UGP4 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIMD1Q9UGP4 AC004408.2-201ENST00000623613 2777 ntBASIC18.86■□□□□ 0.61
LIMD1Q9UGP4 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIMD1Q9UGP4 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.86■□□□□ 0.61
LIMD1Q9UGP4 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC18.86■□□□□ 0.61
LIMD1Q9UGP4 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIMD1Q9UGP4 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
LIMD1Q9UGP4 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
LIMD1Q9UGP4 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIMD1Q9UGP4 HLA-J-201ENST00000462773 1622 ntBASIC18.85■□□□□ 0.61
LIMD1Q9UGP4 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LIMD1Q9UGP4 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
LIMD1Q9UGP4 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIMD1Q9UGP4 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
LIMD1Q9UGP4 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC18.85■□□□□ 0.61
LIMD1Q9UGP4 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIMD1Q9UGP4 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
LIMD1Q9UGP4 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIMD1Q9UGP4 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIMD1Q9UGP4 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC18.85■□□□□ 0.61
LIMD1Q9UGP4 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC18.85■□□□□ 0.61
LIMD1Q9UGP4 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIMD1Q9UGP4 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIMD1Q9UGP4 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIMD1Q9UGP4 LBH-204ENST00000406087 559 ntTSL 4 BASIC18.85■□□□□ 0.61
LIMD1Q9UGP4 KRT18P3-201ENST00000451602 1288 ntBASIC18.85■□□□□ 0.61
LIMD1Q9UGP4 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
LIMD1Q9UGP4 DHDH-204ENST00000523250 634 ntTSL 5 BASIC18.85■□□□□ 0.61
LIMD1Q9UGP4 AC009533.2-201ENST00000543664 586 ntBASIC18.85■□□□□ 0.61
LIMD1Q9UGP4 SART3-203ENST00000546611 1184 ntBASIC18.85■□□□□ 0.61
LIMD1Q9UGP4 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC18.85■□□□□ 0.61
LIMD1Q9UGP4 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIMD1Q9UGP4 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIMD1Q9UGP4 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIMD1Q9UGP4 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LIMD1Q9UGP4 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIMD1Q9UGP4 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LIMD1Q9UGP4 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC18.85■□□□□ 0.61
LIMD1Q9UGP4 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIMD1Q9UGP4 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC18.85■□□□□ 0.61
LIMD1Q9UGP4 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 FP475955.4-201ENST00000623131 1990 ntBASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 AP005117.1-201ENST00000584346 1413 ntBASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 IMP4-203ENST00000409935 958 ntTSL 5 BASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 HNRNPA1P28-201ENST00000424481 961 ntBASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 GPX1P2-201ENST00000429271 606 ntBASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 FIS1-203ENST00000442303 631 ntTSL 3 BASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 AL591424.1-201ENST00000442569 1213 ntBASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 INTS4P1-201ENST00000438455 1935 ntBASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LIMD1Q9UGP4 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
LIMD1Q9UGP4 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
LIMD1Q9UGP4 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.83■□□□□ 0.61
LIMD1Q9UGP4 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC18.83■□□□□ 0.61
LIMD1Q9UGP4 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
LIMD1Q9UGP4 AC022898.2-201ENST00000616822 1312 ntBASIC18.83■□□□□ 0.61
LIMD1Q9UGP4 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC18.83■□□□□ 0.61
LIMD1Q9UGP4 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
LIMD1Q9UGP4 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC18.83■□□□□ 0.6
LIMD1Q9UGP4 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
LIMD1Q9UGP4 FUOM-202ENST00000368551 628 ntTSL 3 BASIC18.83■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms