Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC16.08■□□□□ 0.16
CLCF1Q9UBD9 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CLCF1Q9UBD9 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CLCF1Q9UBD9 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CLCF1Q9UBD9 CCS-201ENST00000310190 942 ntTSL 5 BASIC16.08■□□□□ 0.16
CLCF1Q9UBD9 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CLCF1Q9UBD9 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CLCF1Q9UBD9 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CLCF1Q9UBD9 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CLCF1Q9UBD9 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC16.08■□□□□ 0.16
CLCF1Q9UBD9 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC16.08■□□□□ 0.16
CLCF1Q9UBD9 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC16.08■□□□□ 0.16
CLCF1Q9UBD9 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC16.08■□□□□ 0.16
CLCF1Q9UBD9 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CLCF1Q9UBD9 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC16.08■□□□□ 0.16
CLCF1Q9UBD9 LINC01711-201ENST00000598340 967 ntBASIC16.08■□□□□ 0.16
CLCF1Q9UBD9 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CLCF1Q9UBD9 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
CLCF1Q9UBD9 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC16.08■□□□□ 0.16
CLCF1Q9UBD9 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CLCF1Q9UBD9 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC16.08■□□□□ 0.16
CLCF1Q9UBD9 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
CLCF1Q9UBD9 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CLCF1Q9UBD9 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CLCF1Q9UBD9 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC16.08■□□□□ 0.16
CLCF1Q9UBD9 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CLCF1Q9UBD9 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CLCF1Q9UBD9 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
CLCF1Q9UBD9 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CLCF1Q9UBD9 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
CLCF1Q9UBD9 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLCF1Q9UBD9 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLCF1Q9UBD9 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
CLCF1Q9UBD9 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CLCF1Q9UBD9 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CLCF1Q9UBD9 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLCF1Q9UBD9 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLCF1Q9UBD9 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC16.07■□□□□ 0.16
CLCF1Q9UBD9 POM121L3P-201ENST00000419331 1163 ntBASIC16.07■□□□□ 0.16
CLCF1Q9UBD9 AC026396.1-201ENST00000419388 421 ntBASIC16.07■□□□□ 0.16
CLCF1Q9UBD9 KRT16P4-201ENST00000453883 522 ntBASIC16.07■□□□□ 0.16
CLCF1Q9UBD9 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
CLCF1Q9UBD9 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLCF1Q9UBD9 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC16.07■□□□□ 0.16
CLCF1Q9UBD9 TPM1-218ENST00000559281 851 ntTSL 5 BASIC16.07■□□□□ 0.16
CLCF1Q9UBD9 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC16.07■□□□□ 0.16
CLCF1Q9UBD9 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC16.07■□□□□ 0.16
CLCF1Q9UBD9 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLCF1Q9UBD9 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLCF1Q9UBD9 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CLCF1Q9UBD9 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLCF1Q9UBD9 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLCF1Q9UBD9 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLCF1Q9UBD9 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLCF1Q9UBD9 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CLCF1Q9UBD9 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC16.07■□□□□ 0.16
CLCF1Q9UBD9 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLCF1Q9UBD9 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLCF1Q9UBD9 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
CLCF1Q9UBD9 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLCF1Q9UBD9 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC16.07■□□□□ 0.16
CLCF1Q9UBD9 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLCF1Q9UBD9 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC16.07■□□□□ 0.16
CLCF1Q9UBD9 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC16.07■□□□□ 0.16
CLCF1Q9UBD9 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLCF1Q9UBD9 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
CLCF1Q9UBD9 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLCF1Q9UBD9 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
CLCF1Q9UBD9 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLCF1Q9UBD9 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLCF1Q9UBD9 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLCF1Q9UBD9 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLCF1Q9UBD9 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CLCF1Q9UBD9 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
CLCF1Q9UBD9 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
CLCF1Q9UBD9 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
CLCF1Q9UBD9 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CLCF1Q9UBD9 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLCF1Q9UBD9 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLCF1Q9UBD9 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLCF1Q9UBD9 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLCF1Q9UBD9 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLCF1Q9UBD9 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC16.06■□□□□ 0.16
CLCF1Q9UBD9 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC16.06■□□□□ 0.16
CLCF1Q9UBD9 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC16.06■□□□□ 0.16
CLCF1Q9UBD9 EMBP1-201ENST00000458200 901 ntBASIC16.06■□□□□ 0.16
CLCF1Q9UBD9 AC096582.2-201ENST00000510860 516 ntBASIC16.06■□□□□ 0.16
CLCF1Q9UBD9 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLCF1Q9UBD9 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CLCF1Q9UBD9 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC16.06■□□□□ 0.16
CLCF1Q9UBD9 IGHV3OR16-7-201ENST00000604106 360 ntBASIC16.06■□□□□ 0.16
CLCF1Q9UBD9 AC114341.1-201ENST00000618070 349 ntBASIC16.06■□□□□ 0.16
CLCF1Q9UBD9 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
CLCF1Q9UBD9 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CLCF1Q9UBD9 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLCF1Q9UBD9 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLCF1Q9UBD9 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLCF1Q9UBD9 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC16.06■□□□□ 0.16
CLCF1Q9UBD9 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC16.06■□□□□ 0.16
CLCF1Q9UBD9 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms